Wall clock time and date at job start Mon Mar 30 2020 17:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47367 * 2 1 4 4 C 1.50700 * 109.47359 * 120.00671 * 2 1 3 5 5 H 1.07997 * 120.00257 * 25.62169 * 4 2 1 6 6 C 1.37885 * 119.99721 * 205.61650 * 4 2 1 7 7 N 1.31513 * 120.00244 * 352.96496 * 6 4 2 8 8 Si 1.86795 * 119.99631 * 172.95832 * 6 4 2 9 9 H 1.48493 * 109.47372 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47432 * 300.00269 * 8 6 4 11 11 H 1.48505 * 109.47109 * 60.00470 * 8 6 4 12 12 N 1.46505 * 109.46879 * 240.00701 * 2 1 3 13 13 C 1.34776 * 120.00485 * 84.99743 * 12 2 1 14 14 O 1.21715 * 119.99500 * 0.02562 * 13 12 2 15 15 C 1.46548 * 120.00273 * 180.02562 * 13 12 2 16 16 C 1.37928 * 126.23060 * 180.02562 * 15 13 12 17 17 C 1.39750 * 107.12344 * 179.97438 * 16 15 13 18 18 C 1.35664 * 107.88566 * 359.97438 * 17 16 15 19 19 Cl 1.73594 * 125.57976 * 179.97438 * 18 17 16 20 20 N 1.35581 * 108.84482 * 359.75106 * 18 17 16 21 21 H 0.97004 * 125.69890 * 180.24457 * 20 18 17 22 22 H 1.09006 * 109.46820 * 295.94294 * 1 2 3 23 23 H 1.08998 * 109.47431 * 55.94509 * 1 2 3 24 24 H 1.09004 * 109.47341 * 175.94840 * 1 2 3 25 25 H 0.97000 * 119.99833 * 354.57747 * 7 6 4 26 26 H 0.97006 * 119.99507 * 264.99811 * 12 2 1 27 27 H 1.07998 * 126.43980 * 359.97438 * 16 15 13 28 28 H 1.07995 * 126.05730 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4173 -1.4560 1.7124 6 6 3.2773 -0.4090 1.7405 7 7 4.0820 0.3941 1.0794 8 14 3.8208 -1.1410 3.3709 9 1 5.1890 -0.6642 3.6960 10 1 2.8823 -0.7176 4.4411 11 1 3.8229 -2.6227 3.2720 12 7 2.0182 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3573 14 8 1.8578 1.1630 -2.4116 15 6 2.6348 -0.7090 -3.5540 16 6 2.8154 -0.1494 -4.8017 17 6 3.2929 -1.1599 -5.6406 18 6 3.3948 -2.2967 -4.9074 19 17 3.9428 -3.8342 -5.4985 20 7 3.0033 -2.0345 -3.6361 21 1 2.9832 -2.6737 -2.9068 22 1 -0.3633 0.4496 0.9242 23 1 -0.3634 0.5755 -0.8514 24 1 -0.3634 -1.0251 -0.0726 25 1 3.8331 0.7115 0.1972 26 1 2.2489 -1.6317 -1.1528 27 1 2.6239 0.8768 -5.0783 28 1 3.5375 -1.0545 -6.6872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346379064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:53 Heat of formation + Delta-G solvation = -36.254013 kcal Electronic energy + Delta-G solvation = -14966.414979 eV Core-core repulsion = 12235.520032 eV Total energy + Delta-G solvation = -2730.894948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.056 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.38565 -40.14494 -37.76876 -36.93336 -34.25885 -32.44796 -31.64409 -29.70710 -26.81090 -24.51622 -22.66030 -21.60773 -21.25933 -20.36280 -18.90601 -17.32970 -16.60336 -16.33467 -15.68529 -15.53760 -15.22025 -15.08441 -14.79728 -14.06476 -13.81547 -13.80314 -13.08329 -12.95647 -12.76481 -12.63087 -12.32060 -12.13716 -11.92026 -11.30069 -10.78544 -10.71261 -10.23420 -9.89477 -9.22840 -8.74050 -6.57732 0.26880 0.51600 1.49524 1.55479 1.60017 1.81545 2.14272 2.32381 2.40731 2.53371 3.20628 3.89513 4.10866 4.23101 4.44596 4.67714 4.69878 4.76199 5.02842 5.12094 5.24836 5.37024 5.62511 5.71528 5.85115 6.06293 6.08901 6.39218 6.81897 7.29158 7.32393 8.61129 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.006425 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.802712 B = 4356.985486 C = 4960.867384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.237 3.763 3 H 0.009 0.991 4 C -0.615 4.615 5 H 0.066 0.934 6 C -0.016 4.016 7 N -0.918 5.918 8 Si 1.119 2.881 9 H -0.290 1.290 10 H -0.270 1.270 11 H -0.262 1.262 12 N -0.698 5.698 13 C 0.566 3.434 14 O -0.589 6.589 15 C -0.048 4.048 16 C -0.114 4.114 17 C -0.175 4.175 18 C 0.086 3.914 19 Cl 0.003 6.997 20 N -0.524 5.524 21 H 0.427 0.573 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.259 0.741 26 H 0.392 0.608 27 H 0.156 0.844 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -9.721 -10.867 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.136 3.864 3 H 0.027 0.973 4 C -0.653 4.653 5 H 0.084 0.916 6 C -0.218 4.218 7 N -0.552 5.552 8 Si 0.939 3.061 9 H -0.216 1.216 10 H -0.195 1.195 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.353 3.647 14 O -0.471 6.471 15 C -0.162 4.162 16 C -0.140 4.140 17 C -0.200 4.200 18 C -0.057 4.057 19 Cl 0.031 6.969 20 N -0.124 5.124 21 H 0.267 0.733 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.226 0.774 27 H 0.174 0.826 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.105 -9.099 -9.650 13.264 hybrid contribution -1.023 -0.532 -0.825 1.417 sum -0.918 -9.631 -10.475 14.259 Atomic orbital electron populations 1.21886 0.96010 1.00897 1.00159 1.18772 0.91888 0.92838 0.82917 0.97271 1.22390 1.04673 1.26665 1.11618 0.91580 1.27487 0.93474 0.94229 1.06659 1.70881 1.39081 1.31253 1.14000 0.82923 0.75776 0.76328 0.71046 1.21635 1.19503 1.18666 1.47282 1.64335 1.13606 1.09442 1.17661 0.77832 0.86286 0.82881 1.90743 1.54251 1.16651 1.85472 1.20546 1.14232 0.84395 0.96994 1.21492 1.01641 1.00521 0.90371 1.20937 1.08211 0.89291 1.01547 1.21231 1.08229 0.90628 0.85660 1.98400 1.87697 1.25254 1.85522 1.41996 1.50531 1.09714 1.10183 0.73293 0.92175 0.94975 0.92348 0.93065 0.77357 0.82592 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 9.46 71.98 0.68 -4.95 15 2 C 0.24 11.84 2.04 44.24 0.09 11.93 15 3 H 0.01 0.55 6.59 -2.39 -0.02 0.53 15 4 C -0.62 -31.78 8.49 25.60 0.22 -31.57 15 5 H 0.07 3.25 7.82 -2.91 -0.02 3.23 15 6 C -0.02 -0.87 5.45 84.66 0.46 -0.41 15 7 N -0.92 -54.45 13.56 21.45 0.29 -54.16 15 8 Si 1.12 46.35 29.91 68.60 2.05 48.40 15 9 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 10 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 11 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 12 N -0.70 -30.66 5.00 -450.19 -2.25 -32.91 15 13 C 0.57 24.96 7.75 86.41 0.67 25.63 15 14 O -0.59 -30.44 16.54 -4.40 -0.07 -30.52 15 15 C -0.05 -1.67 7.06 40.30 0.28 -1.39 15 16 C -0.11 -3.49 10.65 22.56 0.24 -3.25 15 17 C -0.17 -4.23 10.78 22.04 0.24 -4.00 15 18 C 0.09 2.09 7.74 83.52 0.65 2.73 15 19 Cl 0.00 0.05 29.30 -2.72 -0.08 -0.02 15 20 N -0.52 -14.53 6.00 -174.62 -1.05 -15.57 15 21 H 0.43 10.30 8.19 -92.71 -0.76 9.54 15 22 H 0.06 2.48 8.14 -2.38 -0.02 2.46 15 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.26 16.10 6.93 -92.71 -0.64 15.46 15 26 H 0.39 15.21 7.72 -92.70 -0.72 14.50 15 27 H 0.16 4.65 8.06 -2.91 -0.02 4.62 15 28 H 0.18 3.18 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -65.84 268.85 2.28 -63.56 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.14 Total: 26.49 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 3.53 Total: -5.26 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.01 Total: -102.64 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.07 Total: -30.52 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.05 Total: 48.40 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.02 kcal Total: -65.84 2.28 -63.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346379064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.303 kcal (2) G-P(sol) polarization free energy of solvation -65.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds