Wall clock time and date at job start Mon Mar 30 2020 18:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47160 * 179.97438 * 16 15 13 18 18 N 1.34773 * 120.00197 * 179.97438 * 17 16 15 19 19 O 1.21284 * 120.00227 * 359.97438 * 17 16 15 20 20 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 23 23 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 24 24 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 25 25 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 26 26 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 27 27 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 28 28 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 29 29 H 0.97001 * 119.99917 * 359.97438 * 18 17 16 30 30 H 0.96999 * 120.00292 * 179.97438 * 18 17 16 31 31 H 1.09001 * 113.77016 * 221.05654 * 20 12 11 32 32 H 1.09005 * 113.86980 * 89.67729 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3786 -7.4799 3.7431 18 7 -1.7167 -8.7301 4.1162 19 8 -1.9051 -6.5253 4.2745 20 6 2.1615 -3.7405 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 -0.3764 -1.7802 -0.9678 23 1 1.3966 -2.5373 2.2104 24 1 -0.2731 -2.8605 1.5670 25 1 0.1879 -5.3004 3.3596 26 1 -1.0946 -5.3215 2.1255 27 1 -0.6840 -7.7370 1.7414 28 1 0.5985 -7.7151 2.9756 29 1 -1.2959 -9.4937 3.6910 30 1 -2.3809 -8.8663 4.8099 31 1 2.1758 -4.2745 -0.9513 32 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467239294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:04 Heat of formation + Delta-G solvation = -100.079758 kcal Electronic energy + Delta-G solvation = -17329.727800 eV Core-core repulsion = 14291.189090 eV Total energy + Delta-G solvation = -3038.538710 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81472 -39.18790 -37.36158 -33.92923 -33.77066 -32.49365 -32.18211 -28.79371 -26.04945 -25.22933 -24.25304 -20.59983 -19.83131 -18.23924 -17.57225 -17.32642 -16.81344 -15.92205 -15.84456 -15.30966 -14.75241 -14.59467 -14.11334 -13.65243 -13.37073 -12.76696 -12.49885 -12.17106 -11.91989 -11.82031 -11.52407 -11.08306 -11.02611 -11.01331 -10.52181 -10.27344 -10.03307 -9.82961 -9.61899 -9.19014 -8.74638 -8.39982 -7.82395 -6.37619 -4.48074 2.57740 3.17744 3.21091 3.23680 3.25166 3.30099 3.74002 4.20187 4.71072 4.85924 5.04663 5.17799 5.26875 5.61888 5.70374 5.95831 5.99807 6.09574 6.20739 6.39870 6.54791 6.62780 6.65492 6.70889 7.11749 7.17457 7.64770 7.83681 8.15949 8.50439 8.54633 8.75363 9.23069 9.47591 10.69092 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.005068 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.398581 B = 5523.168827 C = 5866.975085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.076 3.924 12 N -0.631 5.631 13 C 0.528 3.472 14 O -0.572 6.572 15 C -0.119 4.119 16 C -0.124 4.124 17 C 0.517 3.483 18 N -0.859 5.859 19 O -0.543 6.543 20 C 0.111 3.889 21 H 0.274 0.726 22 H 0.393 0.607 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.402 0.598 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 -10.645 6.045 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.196 3.804 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.454 6.454 15 C -0.159 4.159 16 C -0.164 4.164 17 C 0.302 3.698 18 N -0.423 5.423 19 O -0.420 6.420 20 C -0.011 4.011 21 H 0.084 0.916 22 H 0.248 0.752 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.230 0.770 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.387 -11.007 5.898 12.565 hybrid contribution 0.007 0.931 0.407 1.017 sum -1.380 -10.076 6.305 11.966 Atomic orbital electron populations 1.69311 1.06195 1.28298 1.50048 1.25068 0.95010 0.99866 0.93043 0.86382 0.79492 0.81641 0.78957 1.20998 1.19898 1.19870 1.21478 0.93894 0.90023 1.52244 0.91104 1.19844 0.85454 0.91189 0.83876 1.86052 1.45204 1.50555 1.56775 1.24348 1.00212 0.77597 1.02504 1.50167 1.41759 1.04798 1.39653 1.20149 0.83225 0.81667 0.83206 1.90616 1.57027 1.40236 1.57498 1.21261 0.99941 0.95793 0.98940 1.21363 0.98770 0.98082 0.98206 1.20843 0.82787 0.82772 0.83381 1.43891 1.46483 1.08201 1.43744 1.90762 1.54554 1.40776 1.55879 1.23453 0.93785 0.92569 0.91290 0.91565 0.75164 0.89939 0.91195 0.88648 0.88425 0.88019 0.88133 0.76996 0.77090 0.91183 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.84 11.09 55.43 0.61 -22.23 16 2 C 0.07 1.81 5.40 -17.82 -0.10 1.72 16 3 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.51 8.62 -34.44 -0.30 -13.81 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.73 1.44 -90.84 -0.13 5.60 16 10 O -0.57 -14.82 13.48 -35.23 -0.48 -15.30 16 11 C 0.08 1.65 8.01 -2.97 -0.02 1.63 16 12 N -0.63 -13.38 3.61 -178.30 -0.64 -14.03 16 13 C 0.53 10.49 8.06 -10.99 -0.09 10.40 16 14 O -0.57 -12.51 16.71 5.55 0.09 -12.42 16 15 C -0.12 -1.91 4.74 -27.88 -0.13 -2.04 16 16 C -0.12 -1.57 4.99 -27.88 -0.14 -1.71 16 17 C 0.52 6.44 8.10 -10.99 -0.09 6.35 16 18 N -0.86 -6.76 8.87 31.22 0.28 -6.48 16 19 O -0.54 -9.12 16.82 5.55 0.09 -9.02 16 20 C 0.11 2.43 8.22 -2.97 -0.02 2.41 16 21 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 22 H 0.39 10.24 6.46 45.56 0.29 10.53 16 23 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 24 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.10 1.49 8.10 -51.93 -0.42 1.06 16 26 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 27 H 0.10 1.23 8.10 -51.92 -0.42 0.81 16 28 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.40 1.97 8.83 -40.82 -0.36 1.61 16 30 H 0.40 2.68 8.93 -40.82 -0.36 2.32 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 284.21 15.07 4.28 4.28 Total: -1.00 -30.91 284.21 -5.14 -36.05 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -3.34 Total: 14.15 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.02 Total: 10.54 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.25 Total: -42.74 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.29 Total: -36.74 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.91 -5.14 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467239294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.028 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds