Wall clock time and date at job start Mon Mar 30 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48504 * 109.46826 * 240.00091 * 3 2 1 5 5 H 1.48504 * 109.46625 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47372 * 119.99920 * 3 2 1 7 7 C 1.39010 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00450 * 180.27661 * 7 2 1 9 9 N 1.36915 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00116 * 180.02562 * 9 7 2 11 11 O 1.21644 * 120.00004 * 359.97438 * 10 9 7 12 12 C 1.47327 * 120.00204 * 180.02562 * 10 9 7 13 13 C 1.39882 * 120.18763 * 354.06906 * 12 10 9 14 14 C 1.37892 * 119.93016 * 179.72291 * 13 12 10 15 15 F 1.35099 * 119.83833 * 180.30256 * 14 13 12 16 16 C 1.38817 * 120.32164 * 0.55830 * 14 13 12 17 17 C 1.38122 * 120.38898 * 359.72207 * 16 14 13 18 18 F 1.35100 * 119.97006 * 180.02562 * 17 16 14 19 19 C 1.39119 * 120.05988 * 359.97438 * 17 16 14 20 20 N 1.39147 * 120.16149 * 179.97438 * 19 17 16 21 21 H 0.97000 * 120.00336 * 0.02562 * 1 2 3 22 22 H 0.96997 * 119.99974 * 359.97438 * 9 7 2 23 23 H 1.07997 * 120.03394 * 0.02562 * 13 12 10 24 24 H 1.07997 * 119.80680 * 179.73965 * 16 14 13 25 25 H 0.97003 * 119.99963 * 185.61151 * 20 19 17 26 26 H 0.96998 * 120.00001 * 5.61035 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6964 -1.2126 5 1 1.2827 2.7464 -0.0006 6 1 3.1016 1.6965 1.2124 7 6 2.0090 -1.2038 0.0005 8 1 3.0890 -1.2039 0.0051 9 7 1.3245 -2.3896 0.0016 10 6 1.9984 -3.5568 0.0026 11 8 3.2148 -3.5567 0.0022 12 6 1.2618 -4.8327 0.0032 13 6 -0.1314 -4.8405 0.1276 14 6 -0.8160 -6.0375 0.1218 15 9 -2.1621 -6.0426 0.2359 16 6 -0.1282 -7.2376 0.0045 17 6 1.2480 -7.2456 -0.1133 18 9 1.9087 -8.4185 -0.2274 19 6 1.9542 -6.0470 -0.1155 20 7 3.3406 -6.0527 -0.2335 21 1 -0.4851 0.8400 -0.0004 22 1 0.3545 -2.3896 0.0024 23 1 -0.6708 -3.9098 0.2232 24 1 -0.6724 -8.1705 0.0051 25 1 3.8376 -5.2235 -0.1533 26 1 3.8101 -6.8858 -0.3960 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236201.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:49 Heat of formation + Delta-G solvation = -120.155581 kcal Electronic energy + Delta-G solvation = -16733.218290 eV Core-core repulsion = 13446.888417 eV Total energy + Delta-G solvation = -3286.329873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.91948 -49.78103 -41.07138 -38.87389 -36.41879 -35.16393 -33.51249 -31.86166 -29.35946 -27.25570 -25.02277 -23.32419 -21.69997 -20.23022 -19.31729 -18.45338 -18.10528 -17.39816 -16.97516 -16.85202 -16.60589 -16.20431 -16.06238 -15.74266 -15.52740 -15.35598 -14.76212 -13.83790 -13.56336 -13.47528 -13.28608 -12.92844 -12.89857 -12.42853 -12.13205 -11.60098 -11.51363 -10.52342 -10.19928 -10.03852 -8.56541 -8.53969 -6.01126 -0.33586 0.17143 1.40637 1.43140 1.54092 1.85953 2.24532 2.60768 2.70623 2.90731 3.16507 3.24357 3.39590 3.69992 3.79381 4.12184 4.57552 4.63846 4.83315 4.91969 4.97843 5.34297 5.67820 5.88184 6.28654 6.52843 6.86631 7.04941 7.39398 7.94609 8.60061 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.006700 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.162076 B = 4177.827172 C = 5033.487387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.008 4.008 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.091 0.909 9 N -0.546 5.546 10 C 0.477 3.523 11 O -0.625 6.625 12 C -0.166 4.166 13 C -0.087 4.087 14 C 0.053 3.947 15 F -0.137 7.137 16 C -0.104 4.104 17 C 0.029 3.971 18 F -0.130 7.130 19 C 0.229 3.771 20 N -0.846 5.846 21 H 0.283 0.717 22 H 0.398 0.602 23 H 0.140 0.860 24 H 0.180 0.820 25 H 0.417 0.583 26 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -11.004 -0.212 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.109 0.891 9 N -0.179 5.179 10 C 0.268 3.732 11 O -0.515 6.515 12 C -0.174 4.174 13 C -0.108 4.108 14 C 0.031 3.969 15 F -0.116 7.116 16 C -0.125 4.125 17 C 0.004 3.996 18 F -0.109 7.109 19 C 0.115 3.885 20 N -0.394 5.394 21 H 0.093 0.907 22 H 0.234 0.766 23 H 0.158 0.842 24 H 0.197 0.803 25 H 0.260 0.740 26 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.871 -10.756 -0.208 10.793 hybrid contribution 0.048 0.667 -0.026 0.670 sum -0.823 -10.088 -0.234 10.124 Atomic orbital electron populations 1.69647 1.07117 1.30095 1.47965 1.26192 0.96544 1.02804 0.95452 0.84889 0.77748 0.75944 0.79203 1.19388 1.19501 1.19378 1.19810 0.93303 0.83423 1.49942 0.89069 1.41816 1.09647 1.04638 1.61756 1.17861 0.87017 0.83748 0.84589 1.90180 1.14608 1.86357 1.60348 1.19004 0.93064 0.91840 1.13536 1.21194 0.92686 0.98588 0.98306 1.16686 0.77356 0.93042 1.09802 1.91491 1.28606 1.97281 1.94230 1.21042 0.91932 0.99384 1.00116 1.16472 0.89845 0.79411 1.13843 1.91464 1.80715 1.44326 1.94407 1.17849 0.86167 0.91284 0.93199 1.43396 1.03058 1.15411 1.77580 0.90724 0.76620 0.84180 0.80273 0.73970 0.76640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.26 13.05 21.67 0.28 -46.98 15 2 C -0.01 -0.42 5.50 84.94 0.47 0.05 15 3 Si 1.00 40.79 29.55 68.60 2.03 42.82 15 4 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 7 C -0.34 -18.25 9.68 84.08 0.81 -17.43 15 8 H 0.09 5.17 7.15 -2.91 -0.02 5.15 15 9 N -0.55 -27.56 5.23 -310.06 -1.62 -29.19 15 10 C 0.48 22.76 7.69 86.63 0.67 23.43 15 11 O -0.62 -32.12 13.21 -4.17 -0.06 -32.17 15 12 C -0.17 -6.39 5.89 -19.99 -0.12 -6.50 15 13 C -0.09 -2.95 9.49 22.59 0.21 -2.74 15 14 C 0.05 1.53 7.28 22.33 0.16 1.69 15 15 F -0.14 -3.89 17.26 44.97 0.78 -3.12 15 16 C -0.10 -2.60 9.98 22.38 0.22 -2.38 15 17 C 0.03 0.81 7.30 22.45 0.16 0.98 15 18 F -0.13 -3.35 16.64 44.97 0.75 -2.60 15 19 C 0.23 7.78 6.77 38.69 0.26 8.04 15 20 N -0.85 -27.46 8.94 -50.72 -0.45 -27.91 15 21 H 0.28 13.73 8.31 -92.71 -0.77 12.96 15 22 H 0.40 19.25 5.96 -92.71 -0.55 18.70 15 23 H 0.14 4.81 6.45 -2.91 -0.02 4.79 15 24 H 0.18 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.42 15.72 5.34 -94.93 -0.51 15.21 15 26 H 0.40 10.40 8.32 -92.71 -0.77 9.63 15 Total: -1.00 -58.37 244.37 4.02 -54.35 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.54 Total: 39.66 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 2.86 Total: 5.13 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -1.79 Total: -104.07 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.06 Total: -32.17 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 1.52 Total: -5.72 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -58.37 4.02 -54.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236201.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.804 kcal (2) G-P(sol) polarization free energy of solvation -58.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds