Wall clock time and date at job start Mon Mar 30 2020 18:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99959 * 2 1 4 4 C 1.50699 * 109.47243 * 270.00216 * 3 2 1 5 5 H 1.07993 * 119.99872 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99832 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00093 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47026 * 59.99587 * 8 6 4 10 10 H 1.48496 * 109.47470 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47126 * 300.00052 * 8 6 4 12 12 C 1.34776 * 119.99624 * 179.97438 * 2 1 3 13 13 O 1.21590 * 119.99316 * 180.02562 * 12 2 1 14 14 N 1.34774 * 120.00343 * 0.02562 * 12 2 1 15 15 C 1.40158 * 119.99673 * 175.15196 * 14 12 2 16 16 C 1.38336 * 123.72391 * 185.02939 * 15 14 12 17 17 N 1.29969 * 115.36232 * 179.79739 * 16 15 14 18 18 S 1.56244 * 108.98769 * 0.45010 * 17 16 15 19 19 N 1.31249 * 123.73419 * 5.32612 * 15 14 12 20 20 H 1.08997 * 109.47656 * 270.00134 * 1 2 3 21 21 H 1.09005 * 109.47019 * 30.00066 * 1 2 3 22 22 H 1.09000 * 109.47425 * 149.99548 * 1 2 3 23 23 H 1.09001 * 109.47150 * 29.99890 * 3 2 1 24 24 H 1.09004 * 109.46752 * 149.99704 * 3 2 1 25 25 H 0.97005 * 119.99842 * 180.02562 * 7 6 4 26 26 H 0.96995 * 119.99633 * 354.86639 * 14 12 2 27 27 H 1.07996 * 122.31726 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6175 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.1414 3.5943 -4.1342 10 1 4.1811 4.7025 -3.4338 11 1 4.2412 2.3812 -4.1336 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0010 14 7 1.4649 -2.3344 0.0005 15 6 2.1621 -3.5460 -0.1015 16 6 1.5459 -4.7799 -0.2098 17 7 2.3495 -5.7975 -0.2989 18 16 3.8250 -5.2866 -0.2424 19 7 3.4715 -3.6360 -0.0993 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1383 0.5139 25 1 4.0310 4.4435 -0.8503 26 1 0.4979 -2.3360 0.0753 27 1 0.4716 -4.8896 -0.2231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562765481.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:26 Heat of formation + Delta-G solvation = 51.453561 kcal Electronic energy + Delta-G solvation = -14983.413772 eV Core-core repulsion = 12290.658568 eV Total energy + Delta-G solvation = -2692.755204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.058 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.72916 -39.02025 -35.12231 -34.44985 -32.71936 -31.92258 -27.92603 -26.51511 -25.50815 -23.12593 -21.10484 -20.10257 -18.72364 -17.17589 -16.70808 -16.58020 -15.66070 -15.36656 -14.79192 -14.55476 -14.04013 -13.18413 -12.90284 -12.24445 -12.17413 -11.94101 -11.38996 -11.23632 -11.07229 -10.92463 -10.61123 -10.55758 -10.16205 -9.92246 -9.67711 -9.30993 -8.44721 -8.34726 -7.72127 -6.05930 -4.10872 0.69439 1.40117 1.71327 2.25068 3.03735 3.31441 3.36271 3.40029 3.85792 4.26691 4.45106 4.58476 5.05240 5.28328 5.40377 5.51057 5.77269 6.04116 6.23337 6.48044 6.78758 7.28295 7.42275 7.57282 7.90936 8.19713 8.44040 8.88962 9.13547 9.54385 11.02043 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.005847 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.176889 B = 4787.331431 C = 5157.357585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.609 5.609 3 C 0.261 3.739 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.688 3.312 13 O -0.526 6.526 14 N -0.650 5.650 15 C 0.329 3.671 16 C 0.011 3.989 17 N -0.511 5.511 18 S 0.494 5.506 19 N -0.460 5.460 20 H 0.047 0.953 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.046 0.954 25 H 0.264 0.736 26 H 0.414 0.586 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -14.165 1.994 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C 0.142 3.858 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.388 3.612 13 O -0.397 6.397 14 N -0.307 5.307 15 C 0.058 3.942 16 C -0.196 4.196 17 N -0.348 5.348 18 S 0.531 5.469 19 N -0.302 5.302 20 H 0.066 0.934 21 H 0.100 0.900 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.252 0.748 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.115 -14.802 1.957 15.783 hybrid contribution -2.077 1.118 -0.943 2.541 sum -7.192 -13.684 1.014 15.492 Atomic orbital electron populations 1.21647 0.81503 1.02651 1.00552 1.47510 1.05813 1.05923 1.75306 1.19289 0.92421 0.76541 0.97592 1.21401 1.36811 1.06322 0.92296 0.92502 1.24919 0.95252 0.96355 0.97481 1.69917 1.38223 1.14378 1.30805 0.86547 0.78352 0.77830 0.84610 1.20271 1.21142 1.20172 1.15981 0.85823 0.79837 0.79522 1.91035 1.10680 1.84207 1.53731 1.42747 1.09930 1.01549 1.76514 1.19723 0.88452 0.88243 0.97755 1.23101 1.03056 0.85361 1.08062 1.71992 1.08340 1.35196 1.19240 1.82553 1.09278 0.95429 1.59592 1.77567 1.13993 1.12726 1.25874 0.93438 0.90046 0.93059 0.94537 0.93597 0.92595 0.74785 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.16 59.85 0.61 1.74 15 2 N -0.61 -12.49 2.86 -188.74 -0.54 -13.03 15 3 C 0.26 6.70 5.16 -5.19 -0.03 6.67 15 4 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 15 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 7 N -0.89 -26.43 13.29 55.43 0.74 -25.70 15 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 15 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 12 C 0.69 14.49 8.24 -86.92 -0.72 13.77 15 13 O -0.53 -13.82 14.50 5.29 0.08 -13.75 15 14 N -0.65 -9.86 5.28 -18.42 -0.10 -9.96 15 15 C 0.33 5.06 7.51 -155.14 -1.16 3.89 15 16 C 0.01 0.13 11.32 -18.30 -0.21 -0.08 15 17 N -0.51 -6.58 11.40 19.78 0.23 -6.36 15 18 S 0.49 6.68 24.22 -107.50 -2.60 4.08 15 19 N -0.46 -8.40 10.19 29.05 0.30 -8.10 15 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.08 1.20 8.07 -51.93 -0.42 0.78 15 22 H 0.05 0.54 6.44 -51.93 -0.33 0.20 15 23 H 0.04 0.93 8.07 -51.93 -0.42 0.51 15 24 H 0.05 1.34 7.42 -51.93 -0.39 0.96 15 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 26 H 0.41 4.26 6.61 -40.82 -0.27 3.99 15 27 H 0.20 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 258.77 15.07 3.90 3.90 Total: -1.00 -35.60 258.77 -7.17 -42.77 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -2.22 Total: -3.16 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -1.93 Total: 12.45 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.62 Total: -63.14 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -2.60 Total: 4.08 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.60 -7.17 -42.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562765481.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.221 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds