Wall clock time and date at job start Mon Mar 30 2020 18:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99959 * 2 1 4 4 C 1.50699 * 109.47243 * 270.00216 * 3 2 1 5 5 H 1.07993 * 119.99872 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99832 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00093 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47026 * 59.99587 * 8 6 4 10 10 H 1.48496 * 109.47470 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47126 * 300.00052 * 8 6 4 12 12 C 1.34776 * 119.99624 * 179.97438 * 2 1 3 13 13 O 1.21590 * 119.99316 * 180.02562 * 12 2 1 14 14 N 1.34774 * 120.00343 * 0.02562 * 12 2 1 15 15 C 1.40158 * 119.99673 * 175.15196 * 14 12 2 16 16 C 1.38336 * 123.72391 * 185.02939 * 15 14 12 17 17 N 1.29969 * 115.36232 * 179.79739 * 16 15 14 18 18 S 1.56244 * 108.98769 * 0.45010 * 17 16 15 19 19 N 1.31249 * 123.73419 * 5.32612 * 15 14 12 20 20 H 1.08997 * 109.47656 * 270.00134 * 1 2 3 21 21 H 1.09005 * 109.47019 * 30.00066 * 1 2 3 22 22 H 1.09000 * 109.47425 * 149.99548 * 1 2 3 23 23 H 1.09001 * 109.47150 * 29.99890 * 3 2 1 24 24 H 1.09004 * 109.46752 * 149.99704 * 3 2 1 25 25 H 0.97005 * 119.99842 * 180.02562 * 7 6 4 26 26 H 0.96995 * 119.99633 * 354.86639 * 14 12 2 27 27 H 1.07996 * 122.31726 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6175 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.1414 3.5943 -4.1342 10 1 4.1811 4.7025 -3.4338 11 1 4.2412 2.3812 -4.1336 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0010 14 7 1.4649 -2.3344 0.0005 15 6 2.1621 -3.5460 -0.1015 16 6 1.5459 -4.7799 -0.2098 17 7 2.3495 -5.7975 -0.2989 18 16 3.8250 -5.2866 -0.2424 19 7 3.4715 -3.6360 -0.0993 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1383 0.5139 25 1 4.0310 4.4435 -0.8503 26 1 0.4979 -2.3360 0.0753 27 1 0.4716 -4.8896 -0.2231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562765481.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:22 Heat of formation + Delta-G solvation = 24.535555 kcal Electronic energy + Delta-G solvation = -14984.581025 eV Core-core repulsion = 12290.658568 eV Total energy + Delta-G solvation = -2693.922457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.058 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -41.99069 -40.42828 -36.74114 -35.92481 -34.67834 -33.26624 -29.79621 -27.76422 -26.93558 -24.94657 -22.40965 -21.43567 -20.06115 -18.70435 -18.48612 -18.04857 -16.97644 -16.81242 -16.25050 -15.99002 -15.69696 -14.83353 -14.44005 -13.87067 -13.48990 -13.23822 -13.15709 -12.82760 -12.65951 -12.54097 -12.19307 -12.09701 -11.77344 -11.72947 -11.15095 -10.95801 -10.62750 -9.63436 -9.27530 -8.21072 -6.35515 -0.37318 0.27421 0.67749 1.14568 1.37292 1.41791 1.48542 1.67017 2.29330 2.41113 2.96425 3.09104 3.52742 4.19805 4.34209 4.56406 4.71378 4.82357 5.00207 5.08605 5.25117 5.41338 5.54762 5.79313 6.06511 6.07166 6.72994 6.98919 7.31194 7.58247 8.85439 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.005847 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.176889 B = 4787.331431 C = 5157.357585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.615 5.615 3 C 0.276 3.724 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.686 3.314 13 O -0.590 6.590 14 N -0.626 5.626 15 C 0.317 3.683 16 C 0.039 3.961 17 N -0.515 5.515 18 S 0.514 5.486 19 N -0.530 5.530 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.034 0.966 24 H -0.003 1.003 25 H 0.267 0.733 26 H 0.439 0.561 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -15.482 1.057 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.386 3.614 13 O -0.465 6.465 14 N -0.286 5.286 15 C 0.046 3.954 16 C -0.168 4.168 17 N -0.351 5.351 18 S 0.552 5.448 19 N -0.371 5.371 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.112 0.888 23 H 0.052 0.948 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.282 0.718 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.617 -16.181 1.024 17.914 hybrid contribution -1.361 1.432 -0.601 2.065 sum -8.978 -14.750 0.423 17.273 Atomic orbital electron populations 1.22018 0.77302 1.04486 1.03129 1.47346 1.08282 1.04275 1.75127 1.18723 0.90991 0.78884 0.95953 1.21695 1.36918 1.06437 0.93182 0.92893 1.25817 0.94922 0.96497 1.01807 1.70034 1.38874 1.14827 1.32987 0.85502 0.78874 0.77224 0.79389 1.18229 1.20375 1.20785 1.16147 0.85235 0.81109 0.78922 1.90993 1.13682 1.85540 1.56300 1.42176 1.10824 0.99988 1.75588 1.20126 0.88116 0.89127 0.98073 1.23604 1.04948 0.83109 1.05136 1.72119 1.08067 1.35095 1.19802 1.82422 1.09823 0.92666 1.59841 1.77356 1.16300 1.16436 1.27047 0.90416 0.90739 0.88766 0.94761 0.98443 0.92390 0.71760 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 10.16 127.77 1.30 3.14 15 2 N -0.61 -25.01 2.86 -869.30 -2.48 -27.50 15 3 C 0.28 14.64 5.16 85.63 0.44 15.08 15 4 C -0.54 -31.10 9.39 25.60 0.24 -30.86 15 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 15 6 C 0.01 0.50 5.46 84.65 0.46 0.96 15 7 N -0.93 -55.98 13.29 21.44 0.28 -55.69 15 8 Si 0.97 44.98 29.54 68.60 2.03 47.00 15 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 15 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 12 C 0.69 28.86 8.24 179.06 1.48 30.33 15 13 O -0.59 -32.23 14.50 -4.00 -0.06 -32.29 15 14 N -0.63 -17.66 5.28 -330.44 -1.74 -19.40 15 15 C 0.32 9.15 7.51 132.81 1.00 10.15 15 16 C 0.04 0.76 11.32 84.99 0.96 1.72 15 17 N -0.51 -11.84 11.40 -91.32 -1.04 -12.88 15 18 S 0.51 13.47 24.22 -56.49 -1.37 12.10 15 19 N -0.53 -19.35 10.19 -62.00 -0.63 -19.98 15 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.07 2.03 8.07 -2.38 -0.02 2.02 15 22 H 0.09 1.56 6.44 -2.39 -0.02 1.54 15 23 H 0.03 1.81 8.07 -2.39 -0.02 1.79 15 24 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 15 25 H 0.27 15.17 8.31 -92.70 -0.77 14.40 15 26 H 0.44 7.25 6.61 -92.71 -0.61 6.64 15 27 H 0.25 1.93 8.06 -2.91 -0.02 1.91 15 Total: -1.00 -81.87 258.77 1.46 -80.41 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 0.60 Total: -2.29 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 5.88 Total: 30.52 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.62 Total: -135.46 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.06 Total: -32.29 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 13.47 SS G_CDS: -1.37 Total: 12.10 kcal Total: -81.87 1.46 -80.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562765481.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.945 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.95 seconds