Wall clock time and date at job start Mon Mar 30 2020 18:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47306 * 2 1 4 4 C 1.50705 * 109.46737 * 119.99952 * 2 1 3 5 5 O 1.20823 * 119.99982 * 119.99807 * 4 2 1 6 6 O 1.34228 * 119.99831 * 299.99570 * 4 2 1 7 7 C 1.50692 * 109.46941 * 239.99723 * 2 1 3 8 8 O 1.20833 * 120.00118 * 237.32530 * 7 2 1 9 9 O 1.34227 * 120.00609 * 57.32393 * 7 2 1 10 10 C 1.45200 * 117.00835 * 185.31712 * 9 7 2 11 11 C 1.52991 * 109.47353 * 175.13011 * 10 9 7 12 12 C 1.50701 * 115.55113 * 186.96262 * 11 10 9 13 13 H 1.08000 * 120.00329 * 144.43454 * 12 11 10 14 14 C 1.37882 * 119.99788 * 324.42356 * 12 11 10 15 15 N 1.31513 * 119.99797 * 167.77162 * 14 12 11 16 16 Si 1.86802 * 119.99771 * 347.78405 * 14 12 11 17 17 H 1.48492 * 109.47497 * 95.66899 * 16 14 12 18 18 H 1.48502 * 109.46753 * 215.66899 * 16 14 12 19 19 H 1.48491 * 109.47183 * 335.66105 * 16 14 12 20 20 C 1.53000 * 117.49900 * 41.28912 * 11 10 9 21 21 C 1.53001 * 117.50000 * 332.63023 * 11 10 9 22 22 H 1.09001 * 109.47305 * 304.80772 * 1 2 3 23 23 H 1.08997 * 109.47219 * 64.80588 * 1 2 3 24 24 H 1.08997 * 109.47724 * 184.81060 * 1 2 3 25 25 H 0.96708 * 116.99841 * 180.02562 * 6 4 2 26 26 H 1.08994 * 109.46744 * 295.13588 * 10 9 7 27 27 H 1.09006 * 109.46512 * 55.13034 * 10 9 7 28 28 H 0.97003 * 119.99600 * 180.02562 * 15 14 12 29 29 H 1.09001 * 117.49817 * 0.02562 * 20 11 10 30 30 H 1.09003 * 117.49664 * 145.02319 * 20 11 10 31 31 H 1.09007 * 117.49852 * 214.97958 * 21 11 10 32 32 H 1.09004 * 117.50194 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7268 -1.6928 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.0323 -0.7104 -1.2304 8 8 2.7663 -1.6639 -1.1202 9 8 1.6643 -0.2842 -2.4488 10 6 2.0881 -1.0851 -3.5834 11 6 1.4781 -0.5160 -4.8658 12 6 1.6953 -1.3386 -6.1096 13 1 0.9235 -1.3924 -6.8631 14 6 2.8797 -2.0223 -6.2858 15 7 2.9832 -2.9236 -7.2379 16 14 4.3369 -1.6685 -5.1720 17 1 4.3613 -2.6533 -4.0608 18 1 5.5948 -1.7736 -5.9542 19 1 4.2133 -0.2974 -4.6156 20 6 1.4522 1.0059 -5.0208 21 6 0.1550 0.2424 -4.7426 22 1 -0.3634 0.5866 0.8438 23 1 -0.3633 0.4374 -0.9299 24 1 -0.3634 -1.0240 0.0862 25 1 2.0540 -0.7405 3.2090 26 1 3.1753 -1.0635 -3.6574 27 1 1.7536 -2.1136 -3.4472 28 1 3.8163 -3.4049 -7.3616 29 1 1.8702 1.6017 -4.2094 30 1 1.5920 1.4122 -6.0226 31 1 -0.5581 0.1467 -5.5615 32 1 -0.2811 0.3356 -3.7480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588579771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:43 Heat of formation + Delta-G solvation = -162.368242 kcal Electronic energy + Delta-G solvation = -17839.460926 eV Core-core repulsion = 14765.928434 eV Total energy + Delta-G solvation = -3073.532492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -42.19841 -40.91990 -38.89908 -37.25945 -36.78472 -34.77480 -34.42791 -29.64022 -27.47551 -26.43396 -24.24663 -23.06071 -21.55227 -21.10578 -19.36612 -18.86119 -18.51341 -17.83033 -17.62372 -17.22140 -16.63035 -16.45928 -15.61041 -15.26258 -14.76886 -14.58599 -14.41468 -13.79859 -13.41814 -13.15943 -13.05678 -12.91374 -12.71372 -12.56323 -12.38358 -12.05224 -11.91452 -11.66324 -11.48125 -11.24117 -11.14806 -10.66489 -10.28571 -8.47210 -6.42356 0.95965 1.10179 1.14372 1.21857 1.24433 1.32271 2.13257 2.17845 2.73594 3.25442 3.41223 3.74909 3.91890 3.93352 4.00844 4.13251 4.26760 4.47342 4.73498 4.76733 4.80870 4.97241 5.01040 5.22538 5.24885 5.38781 5.54375 5.57949 5.58826 6.18359 6.55412 6.58795 6.93392 7.16266 8.69058 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.032256 B = 0.007285 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.848044 B = 3842.555980 C = 4433.344856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 H 0.185 0.815 4 C 0.487 3.513 5 O -0.527 6.527 6 O -0.493 6.493 7 C 0.447 3.553 8 O -0.519 6.519 9 O -0.335 6.335 10 C 0.098 3.902 11 C -0.038 4.038 12 C -0.484 4.484 13 H 0.053 0.947 14 C 0.031 3.969 15 N -0.929 5.929 16 Si 0.923 3.077 17 H -0.286 1.286 18 H -0.286 1.286 19 H -0.240 1.240 20 C -0.181 4.181 21 C -0.152 4.152 22 H 0.118 0.882 23 H 0.096 0.904 24 H 0.055 0.945 25 H 0.433 0.567 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 10.913 18.970 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 H 0.202 0.798 4 C 0.328 3.672 5 O -0.415 6.415 6 O -0.308 6.308 7 C 0.289 3.711 8 O -0.407 6.407 9 O -0.251 6.251 10 C 0.025 3.975 11 C -0.039 4.039 12 C -0.522 4.522 13 H 0.072 0.928 14 C -0.169 4.169 15 N -0.567 5.567 16 Si 0.752 3.248 17 H -0.213 1.213 18 H -0.213 1.213 19 H -0.164 1.164 20 C -0.219 4.219 21 C -0.189 4.189 22 H 0.137 0.863 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.296 0.704 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.972 10.420 18.502 21.809 hybrid contribution 1.433 -1.115 0.311 1.842 sum -3.539 9.305 18.814 21.285 Atomic orbital electron populations 1.21841 0.86273 1.04171 1.07082 1.20646 1.02239 1.02451 0.83272 0.79765 1.22697 0.76840 0.82002 0.85687 1.90911 1.36129 1.27089 1.87375 1.84406 1.71844 1.58719 1.15800 1.23872 0.78315 0.82837 0.86086 1.90827 1.34349 1.28208 1.87286 1.86382 1.71318 1.52913 1.14484 1.23081 0.97965 0.93735 0.82739 1.19248 1.01504 0.92581 0.90544 1.20488 1.01463 1.27844 1.02382 0.92839 1.25623 1.00803 0.93842 0.96584 1.69999 1.27661 1.24068 1.34976 0.86336 0.80029 0.80275 0.78154 1.21345 1.21265 1.16429 1.23109 1.02220 0.94833 1.01687 1.22841 0.90056 1.03593 1.02400 0.86310 0.88491 0.92563 0.70431 0.93324 0.92625 0.92011 0.88527 0.89975 0.89960 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.07 71.98 0.65 -1.29 16 2 C -0.07 -1.36 3.27 -12.29 -0.04 -1.40 16 3 H 0.19 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.49 11.08 7.62 71.24 0.54 11.62 16 5 O -0.53 -18.19 14.95 29.72 0.44 -17.74 16 6 O -0.49 -6.33 13.35 -51.40 -0.69 -7.01 16 7 C 0.45 15.14 7.27 71.23 0.52 15.66 16 8 O -0.52 -23.10 13.93 29.69 0.41 -22.68 16 9 O -0.33 -11.94 8.23 -51.39 -0.42 -12.37 16 10 C 0.10 4.42 4.08 71.98 0.29 4.71 16 11 C -0.04 -1.74 1.84 -52.93 -0.10 -1.84 16 12 C -0.48 -27.35 9.57 25.60 0.25 -27.11 16 13 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 14 C 0.03 1.83 5.42 84.66 0.46 2.29 16 15 N -0.93 -57.60 13.96 21.45 0.30 -57.30 16 16 Si 0.92 46.60 24.23 68.60 1.66 48.26 16 17 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.24 -11.21 6.34 99.48 0.63 -10.58 16 20 C -0.18 -6.97 9.67 30.62 0.30 -6.68 16 21 C -0.15 -5.63 9.62 30.62 0.29 -5.33 16 22 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.10 1.32 7.94 -2.39 -0.02 1.30 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.43 2.22 9.10 -74.05 -0.67 1.54 16 26 H 0.05 2.37 2.70 -2.39 -0.01 2.37 16 27 H 0.06 2.70 8.10 -2.38 -0.02 2.68 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 29 H 0.10 3.28 7.89 -2.39 -0.02 3.26 16 30 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.08 3.05 8.14 -2.38 -0.02 3.04 16 32 H 0.11 3.42 7.44 -2.38 -0.02 3.40 16 Total: -1.00 -78.57 276.90 5.27 -73.29 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.40 Total: 4.90 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 3.16 Total: -9.35 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.30 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -0.25 Total: -59.81 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.66 Total: 48.26 kcal Total: -78.57 5.27 -73.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588579771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.074 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds