Wall clock time and date at job start Mon Mar 30 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46930 * 2 1 4 4 C 1.50699 * 109.47217 * 239.99999 * 2 1 3 5 5 O 1.20819 * 119.99815 * 239.99745 * 4 2 1 6 6 O 1.34232 * 120.00127 * 59.99923 * 4 2 1 7 7 C 1.50699 * 109.47044 * 119.99646 * 2 1 3 8 8 O 1.20824 * 119.99778 * 120.00373 * 7 2 1 9 9 O 1.34229 * 120.00400 * 299.99967 * 7 2 1 10 10 C 1.45194 * 117.00041 * 183.14303 * 9 7 2 11 11 C 1.50701 * 112.85078 * 294.86869 * 10 9 7 12 12 H 1.07991 * 120.00258 * 118.44982 * 11 10 9 13 13 C 1.37878 * 119.99628 * 298.44539 * 11 10 9 14 14 N 1.31511 * 120.00353 * 1.73355 * 13 11 10 15 15 Si 1.86809 * 119.99661 * 181.72473 * 13 11 10 16 16 H 1.48492 * 109.47458 * 270.00521 * 15 13 11 17 17 H 1.48495 * 109.46793 * 30.00687 * 15 13 11 18 18 H 1.48498 * 109.46675 * 150.00243 * 15 13 11 19 19 C 1.53780 * 113.61670 * 66.06891 * 10 9 7 20 20 C 1.53949 * 87.02191 * 89.22409 * 19 10 9 21 21 C 1.53782 * 87.11034 * 25.36670 * 20 19 10 22 22 H 1.09003 * 109.46489 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47040 * 300.00117 * 1 2 3 24 24 H 1.08999 * 109.47142 * 60.00314 * 1 2 3 25 25 H 0.96696 * 117.00092 * 180.02562 * 6 4 2 26 26 H 0.96995 * 120.00068 * 355.06951 * 14 13 11 27 27 H 1.08998 * 113.61776 * 203.74775 * 19 10 9 28 28 H 1.09008 * 113.60869 * 334.64841 * 19 10 9 29 29 H 1.08999 * 113.54053 * 270.81554 * 20 19 10 30 30 H 1.09004 * 113.74479 * 139.94344 * 20 19 10 31 31 H 1.09001 * 113.61052 * 220.08840 * 21 20 19 32 32 H 1.08993 * 113.69511 * 89.19801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7271 -1.6927 -1.1195 6 8 1.7081 -0.2518 -2.4496 7 6 2.0324 -0.7103 1.2305 8 8 2.7270 -1.6927 1.1197 9 8 1.7081 -0.2517 2.4496 10 6 2.2842 -0.9435 3.5888 11 6 1.8018 -2.3656 3.7151 12 1 2.5059 -3.1821 3.6538 13 6 0.4614 -2.6242 3.9090 14 7 -0.4006 -1.6318 3.9497 15 14 -0.1302 -4.3843 4.1137 16 1 -0.4678 -4.9509 2.7833 17 1 0.9429 -5.1973 4.7402 18 1 -1.3358 -4.4035 4.9804 19 6 3.8120 -0.8001 3.6885 20 6 3.5581 0.4688 4.5223 21 6 2.2002 -0.1458 4.9009 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 2.0536 -0.7410 -3.2088 26 1 -0.0865 -0.7148 3.9151 27 1 4.2903 -1.6029 4.2497 28 1 4.2956 -0.6051 2.7312 29 1 3.4752 1.3748 3.9220 30 1 4.2370 0.5818 5.3676 31 1 1.3844 0.5769 4.9211 32 1 2.2354 -0.7694 5.7941 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588585437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:49 Heat of formation + Delta-G solvation = -156.642741 kcal Electronic energy + Delta-G solvation = -18508.793746 eV Core-core repulsion = 15435.509530 eV Total energy + Delta-G solvation = -3073.284216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42977 -39.30483 -37.21771 -35.78294 -34.21115 -33.12009 -32.39069 -26.09504 -25.17523 -24.76298 -23.36352 -22.15191 -19.98679 -18.38595 -17.85302 -17.26460 -16.48879 -15.88168 -15.48613 -15.08297 -14.70124 -14.05059 -13.75378 -13.45327 -13.18874 -12.62105 -12.33263 -12.04156 -11.70319 -11.57118 -11.38543 -11.23514 -10.83554 -10.53150 -10.38692 -10.23716 -10.16653 -10.08291 -10.02033 -9.27878 -8.94263 -8.46377 -8.16078 -6.39552 -4.17150 2.43349 2.84664 3.29243 3.44181 3.45463 3.62364 3.86563 4.49652 5.08508 5.13372 5.18918 5.29951 5.52766 5.54259 5.67793 5.81144 5.96425 6.02720 6.27622 6.29429 6.41593 6.63403 6.65942 6.68636 6.84287 7.06645 7.32031 7.68158 8.08135 8.15294 8.42769 8.81425 9.01565 9.58104 10.98389 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.010220 C = 0.008275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.443702 B = 2739.160023 C = 3382.675920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 H 0.131 0.869 4 C 0.477 3.523 5 O -0.467 6.467 6 O -0.520 6.520 7 C 0.461 3.539 8 O -0.461 6.461 9 O -0.351 6.351 10 C 0.213 3.787 11 C -0.591 4.591 12 H 0.059 0.941 13 C 0.032 3.968 14 N -0.892 5.892 15 Si 1.066 2.934 16 H -0.288 1.288 17 H -0.287 1.287 18 H -0.283 1.283 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.109 4.109 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.408 0.592 26 H 0.279 0.721 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 6.280 -6.693 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.148 0.852 4 C 0.316 3.684 5 O -0.350 6.350 6 O -0.333 6.333 7 C 0.300 3.700 8 O -0.345 6.345 9 O -0.269 6.269 10 C 0.179 3.821 11 C -0.629 4.629 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.528 5.528 15 Si 0.895 3.105 16 H -0.214 1.214 17 H -0.213 1.213 18 H -0.209 1.209 19 C -0.183 4.183 20 C -0.186 4.186 21 C -0.146 4.146 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.092 0.908 25 H 0.266 0.734 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.957 4.958 -6.102 7.921 hybrid contribution 1.684 0.541 -0.799 1.941 sum 2.640 5.500 -6.901 9.211 Atomic orbital electron populations 1.21651 0.89297 1.04153 1.04108 1.20568 1.00435 1.01167 0.87908 0.85174 1.22778 0.78174 0.83227 0.84267 1.90876 1.33416 1.24304 1.86381 1.84484 1.72965 1.59244 1.16590 1.21983 0.79508 0.83725 0.84807 1.90730 1.33733 1.23166 1.86831 1.86341 1.67492 1.58942 1.14104 1.20894 0.88968 0.91637 0.80576 1.22075 0.96202 0.90626 1.53960 0.92279 1.25826 0.93095 1.05828 0.92818 1.70670 1.36973 1.01065 1.44082 0.83587 0.75686 0.74314 0.76959 1.21425 1.21263 1.20912 1.23364 0.98955 0.96959 0.99041 1.22993 0.98540 0.97571 0.99523 1.22957 0.95439 0.98468 0.97785 0.91464 0.89400 0.90785 0.73377 0.90893 0.89954 0.92892 0.91239 0.92579 0.92258 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.06 37.16 0.34 -1.77 16 2 C -0.08 -1.38 3.27 -92.92 -0.30 -1.69 16 3 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 4 C 0.48 8.11 7.62 36.01 0.27 8.38 16 5 O -0.47 -10.04 14.95 -26.85 -0.40 -10.44 16 6 O -0.52 -6.31 13.33 -39.26 -0.52 -6.83 16 7 C 0.46 10.67 6.63 36.01 0.24 10.91 16 8 O -0.46 -12.35 12.30 -26.86 -0.33 -12.68 16 9 O -0.35 -8.48 9.01 -39.25 -0.35 -8.83 16 10 C 0.21 5.32 0.11 -90.96 -0.01 5.31 16 11 C -0.59 -16.73 7.35 -34.44 -0.25 -16.98 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.03 0.90 5.40 -17.82 -0.10 0.81 16 14 N -0.89 -25.71 13.51 55.43 0.75 -24.96 16 15 Si 1.07 25.58 29.90 -169.99 -5.08 20.49 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.15 -3.24 6.90 -25.83 -0.18 -3.42 16 20 C -0.15 -2.84 8.03 -25.83 -0.21 -3.05 16 21 C -0.11 -2.40 6.66 -25.92 -0.17 -2.57 16 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 24 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 25 H 0.41 3.12 9.10 45.56 0.41 3.54 16 26 H 0.28 7.94 5.76 -40.82 -0.24 7.70 16 27 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 28 H 0.05 1.19 7.32 -51.92 -0.38 0.81 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.29 7.77 -51.93 -0.40 0.89 16 32 H 0.09 1.97 8.09 -51.93 -0.42 1.55 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -34.57 278.09 -5.31 -39.87 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.18 Total: 3.25 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.37 Total: -4.07 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.75 Total: -24.96 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.61 Total: -38.78 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.57 -5.31 -39.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588585437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.769 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds