Wall clock time and date at job start Mon Mar 30 2020 18:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.20828 * 119.99715 * 120.00127 * 12 2 1 14 14 O 1.34228 * 119.99941 * 300.00520 * 12 2 1 15 15 C 1.45200 * 116.99913 * 179.97438 * 14 12 2 16 16 H 1.09004 * 109.47056 * 329.99894 * 15 14 12 17 17 C 1.50703 * 109.47138 * 89.99719 * 15 14 12 18 18 O 1.20825 * 120.00116 * 5.00148 * 17 15 14 19 19 O 1.34230 * 119.99823 * 184.99931 * 17 15 14 20 20 C 1.53002 * 109.47077 * 209.99570 * 15 14 12 21 21 C 1.53004 * 117.49429 * 128.74521 * 20 15 14 22 22 C 1.52999 * 117.49567 * 60.08944 * 20 15 14 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 26 26 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 27 27 H 0.96702 * 116.99462 * 179.97438 * 19 17 15 28 28 H 1.08991 * 115.55216 * 274.41547 * 20 15 14 29 29 H 1.08998 * 117.50277 * 0.02562 * 21 20 15 30 30 H 1.09009 * 117.49537 * 145.02396 * 21 20 15 31 31 H 1.09008 * 117.49721 * 214.97628 * 22 20 15 32 32 H 1.09004 * 117.50250 * 359.97364 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 1 2.3403 -2.0374 3.3235 17 6 3.5667 -0.4207 3.9843 18 8 3.9952 0.5623 3.4275 19 8 4.2841 -1.0088 4.9545 20 6 1.2538 -0.8597 4.7635 21 6 0.8086 -2.1502 5.4545 22 6 -0.1695 -1.3832 4.5611 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.9111 -0.5221 -4.4375 27 1 5.1375 -0.6099 5.1725 28 1 1.3805 0.0263 5.3855 29 1 1.2092 -3.0894 5.0730 30 1 0.6419 -2.1129 6.5311 31 1 -0.9792 -0.8417 5.0502 32 1 -0.4128 -1.8176 3.5914 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:55 Heat of formation + Delta-G solvation = -147.023393 kcal Electronic energy + Delta-G solvation = -17821.900363 eV Core-core repulsion = 14749.033273 eV Total energy + Delta-G solvation = -3072.867090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76384 -39.42130 -37.52089 -36.22048 -35.45403 -34.03386 -31.39351 -29.17123 -25.21430 -23.86542 -22.60661 -22.34334 -20.74700 -19.85640 -18.31757 -17.32275 -17.02834 -16.35575 -16.24591 -15.43055 -15.15951 -14.63062 -14.49349 -13.91790 -13.19544 -12.90188 -12.65375 -12.31197 -11.84178 -11.71987 -11.63484 -11.43904 -11.32067 -11.01291 -10.76788 -10.69206 -10.54779 -10.37661 -10.03874 -9.70320 -9.34010 -9.19660 -8.65568 -6.13492 -4.16547 2.14571 2.51807 2.96533 3.21023 3.26709 3.32549 3.34889 3.87465 4.32449 4.39272 4.65843 4.79068 4.82950 5.16072 5.22986 5.26230 5.49190 5.67284 5.73299 5.89678 5.99179 6.12918 6.27046 6.35495 6.42434 6.66219 6.90941 7.06809 7.44412 7.83937 8.36110 8.57975 9.00697 9.42863 10.98719 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.006863 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.698529 B = 4079.074360 C = 4449.302810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.028 3.972 3 H 0.067 0.933 4 C -0.519 4.519 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.293 1.293 12 C 0.475 3.525 13 O -0.499 6.499 14 O -0.332 6.332 15 C 0.126 3.874 16 H 0.120 0.880 17 C 0.469 3.531 18 O -0.494 6.494 19 O -0.510 6.510 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.159 4.159 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.410 0.590 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 0.345 18.211 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.557 4.557 5 H 0.112 0.888 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.220 1.220 12 C 0.319 3.681 13 O -0.384 6.384 14 O -0.250 6.250 15 C 0.068 3.932 16 H 0.137 0.863 17 C 0.310 3.690 18 O -0.380 6.380 19 O -0.323 6.323 20 C -0.171 4.171 21 C -0.199 4.199 22 C -0.196 4.196 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.269 0.731 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.513 0.122 17.719 18.064 hybrid contribution 0.246 1.042 -0.120 1.077 sum -3.266 1.164 17.599 17.937 Atomic orbital electron populations 1.22104 0.96206 1.01798 1.00245 1.19172 0.94051 0.97818 0.88104 0.91496 1.20895 1.33109 1.14625 0.87077 0.88751 1.24899 0.95657 0.96610 0.95494 1.69863 1.44845 1.40090 0.97953 0.86931 0.80696 0.83696 0.77525 1.20172 1.18834 1.21989 1.24807 0.76816 0.82957 0.83546 1.90550 1.35551 1.26194 1.86102 1.86824 1.68190 1.55621 1.14356 1.21329 0.87306 0.98232 0.86307 0.86300 1.23652 0.87056 0.81703 0.76609 1.90769 1.70303 1.25343 1.51605 1.84504 1.35764 1.58742 1.53266 1.21941 0.97007 1.00197 0.97997 1.23103 1.02922 0.94675 0.99194 1.22971 0.91731 1.02870 1.01985 0.92880 0.92285 0.93498 0.92283 0.73123 0.86581 0.88076 0.87855 0.87912 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.60 37.16 0.32 -2.76 16 2 C 0.03 0.68 2.33 -92.92 -0.22 0.46 16 3 H 0.07 1.63 7.20 -51.93 -0.37 1.25 16 4 C -0.52 -15.05 8.96 -34.44 -0.31 -15.36 16 5 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.88 21.29 24.37 -169.99 -4.14 17.14 16 9 H -0.27 -6.34 6.88 56.52 0.39 -5.95 16 10 H -0.26 -6.02 6.52 56.52 0.37 -5.66 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.48 10.96 7.22 36.00 0.26 11.22 16 13 O -0.50 -12.66 14.68 -18.75 -0.28 -12.93 16 14 O -0.33 -6.42 9.24 -45.89 -0.42 -6.84 16 15 C 0.13 1.98 2.66 -27.88 -0.07 1.90 16 16 H 0.12 1.88 6.91 -51.93 -0.36 1.53 16 17 C 0.47 7.50 7.61 36.01 0.27 7.78 16 18 O -0.49 -9.74 17.27 -25.39 -0.44 -10.18 16 19 O -0.51 -5.92 13.42 -39.26 -0.53 -6.45 16 20 C -0.15 -1.78 5.38 -90.62 -0.49 -2.27 16 21 C -0.16 -1.47 10.18 -26.69 -0.27 -1.74 16 22 C -0.16 -1.63 10.17 -26.69 -0.27 -1.90 16 23 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.41 2.91 9.10 45.56 0.41 3.32 16 28 H 0.12 1.24 8.11 -51.93 -0.42 0.82 16 29 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 30 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -34.68 280.62 -4.67 -39.34 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.99 Total: 2.74 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.87 Total: -0.57 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.66 Total: -36.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.68 -4.67 -39.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.682 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds