Wall clock time and date at job start Mon Mar 30 2020 18:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.20828 * 119.99715 * 120.00127 * 12 2 1 14 14 O 1.34228 * 119.99941 * 300.00520 * 12 2 1 15 15 C 1.45200 * 116.99913 * 179.97438 * 14 12 2 16 16 H 1.09004 * 109.47056 * 329.99894 * 15 14 12 17 17 C 1.50703 * 109.47138 * 89.99719 * 15 14 12 18 18 O 1.20825 * 120.00116 * 5.00148 * 17 15 14 19 19 O 1.34230 * 119.99823 * 184.99931 * 17 15 14 20 20 C 1.53002 * 109.47077 * 209.99570 * 15 14 12 21 21 C 1.53004 * 117.49429 * 128.74521 * 20 15 14 22 22 C 1.52999 * 117.49567 * 60.08944 * 20 15 14 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 26 26 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 27 27 H 0.96702 * 116.99462 * 179.97438 * 19 17 15 28 28 H 1.08991 * 115.55216 * 274.41547 * 20 15 14 29 29 H 1.08998 * 117.50277 * 0.02562 * 21 20 15 30 30 H 1.09009 * 117.49537 * 145.02396 * 21 20 15 31 31 H 1.09008 * 117.49721 * 214.97628 * 22 20 15 32 32 H 1.09004 * 117.50250 * 359.97364 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 1 2.3403 -2.0374 3.3235 17 6 3.5667 -0.4207 3.9843 18 8 3.9952 0.5623 3.4275 19 8 4.2841 -1.0088 4.9545 20 6 1.2538 -0.8597 4.7635 21 6 0.8086 -2.1502 5.4545 22 6 -0.1695 -1.3832 4.5611 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.9111 -0.5221 -4.4375 27 1 5.1375 -0.6099 5.1725 28 1 1.3805 0.0263 5.3855 29 1 1.2092 -3.0894 5.0730 30 1 0.6419 -2.1129 6.5311 31 1 -0.9792 -0.8417 5.0502 32 1 -0.4128 -1.8176 3.5914 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:53 Heat of formation + Delta-G solvation = -171.751396 kcal Electronic energy + Delta-G solvation = -17822.972650 eV Core-core repulsion = 14749.033273 eV Total energy + Delta-G solvation = -3073.939376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.19302 -40.92382 -38.62532 -37.46626 -36.87647 -36.02976 -33.47845 -30.42716 -27.21209 -25.62663 -23.72966 -23.17437 -21.93345 -21.52202 -19.53531 -19.10490 -18.41589 -18.20473 -17.80810 -16.88579 -16.53067 -16.38171 -15.68500 -15.15509 -14.92422 -14.43531 -14.22578 -14.03380 -13.46292 -13.06640 -12.90755 -12.75639 -12.67878 -12.52553 -12.36223 -12.27031 -11.84145 -11.60889 -11.47150 -11.33471 -11.15369 -11.05695 -10.79257 -8.34662 -6.45529 0.89109 1.08486 1.32013 1.34690 1.39684 1.50025 1.98419 2.29727 2.91591 2.98286 3.39357 3.59554 3.81994 3.87037 4.15898 4.18154 4.32318 4.33787 4.51222 4.70649 4.81357 4.93500 4.97829 5.10251 5.17510 5.26367 5.32842 5.37913 5.40273 6.16860 6.65019 6.71648 6.83398 7.19084 8.81981 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.006863 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.698529 B = 4079.074360 C = 4449.302810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 H 0.073 0.927 4 C -0.535 4.535 5 H 0.038 0.962 6 C 0.018 3.982 7 N -0.942 5.942 8 Si 0.952 3.048 9 H -0.251 1.251 10 H -0.238 1.238 11 H -0.294 1.294 12 C 0.480 3.520 13 O -0.535 6.535 14 O -0.326 6.326 15 C 0.115 3.885 16 H 0.114 0.886 17 C 0.475 3.525 18 O -0.540 6.540 19 O -0.492 6.492 20 C -0.168 4.168 21 C -0.140 4.140 22 C -0.160 4.160 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.272 0.728 27 H 0.432 0.568 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 1.701 20.636 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.001 3.999 3 H 0.090 0.910 4 C -0.573 4.573 5 H 0.056 0.944 6 C -0.180 4.180 7 N -0.581 5.581 8 Si 0.776 3.224 9 H -0.176 1.176 10 H -0.162 1.162 11 H -0.221 1.221 12 C 0.325 3.675 13 O -0.423 6.423 14 O -0.243 6.243 15 C 0.059 3.941 16 H 0.132 0.868 17 C 0.317 3.683 18 O -0.429 6.429 19 O -0.306 6.306 20 C -0.186 4.186 21 C -0.177 4.177 22 C -0.197 4.197 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.295 0.705 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.510 1.465 20.215 21.004 hybrid contribution 1.000 0.483 -0.745 1.337 sum -4.510 1.948 19.470 20.081 Atomic orbital electron populations 1.22009 0.92985 1.02512 1.02080 1.19104 0.96603 0.97230 0.86983 0.90969 1.20988 1.32900 1.13557 0.89854 0.94361 1.25895 0.97126 1.00434 0.94571 1.70030 1.46775 1.42492 0.98817 0.85806 0.79374 0.79010 0.78171 1.17576 1.16179 1.22121 1.24487 0.76076 0.82217 0.84691 1.90534 1.37096 1.27775 1.86928 1.86742 1.67858 1.55622 1.14039 1.21788 0.88804 0.97318 0.86225 0.86812 1.23665 0.87142 0.80927 0.76548 1.90757 1.71324 1.27442 1.53420 1.84445 1.36819 1.57895 1.51395 1.22001 0.97106 1.02501 0.97034 1.23257 1.00700 0.93156 1.00585 1.23082 0.91602 1.03037 1.01939 0.92878 0.92311 0.89579 0.91932 0.70528 0.85237 0.88238 0.84930 0.85592 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.60 71.99 0.62 -4.88 16 2 C 0.02 0.98 2.33 -12.28 -0.03 0.95 16 3 H 0.07 3.43 7.20 -2.39 -0.02 3.41 16 4 C -0.54 -32.13 8.96 25.60 0.23 -31.90 16 5 H 0.04 2.66 7.00 -2.91 -0.02 2.64 16 6 C 0.02 1.05 5.45 84.65 0.46 1.51 16 7 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 8 Si 0.95 43.09 24.37 68.60 1.67 44.76 16 9 H -0.25 -10.35 6.88 99.48 0.68 -9.67 16 10 H -0.24 -9.77 6.52 99.48 0.65 -9.13 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.48 22.42 7.22 71.24 0.51 22.94 16 13 O -0.54 -28.28 14.68 21.96 0.32 -27.96 16 14 O -0.33 -12.34 9.24 -45.04 -0.42 -12.75 16 15 C 0.12 3.52 2.66 29.85 0.08 3.60 16 16 H 0.11 3.60 6.91 -2.39 -0.02 3.58 16 17 C 0.47 14.76 7.61 71.24 0.54 15.30 16 18 O -0.54 -21.20 17.27 28.32 0.49 -20.71 16 19 O -0.49 -10.44 13.42 -51.42 -0.69 -11.13 16 20 C -0.17 -3.48 5.38 -10.79 -0.06 -3.54 16 21 C -0.14 -2.07 10.18 30.62 0.31 -1.76 16 22 C -0.16 -2.80 10.17 30.62 0.31 -2.49 16 23 H 0.05 2.10 3.28 -2.39 -0.01 2.09 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 26 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 27 H 0.43 5.18 9.10 -74.06 -0.67 4.50 16 28 H 0.13 2.35 8.11 -2.39 -0.02 2.33 16 29 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 30 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.13 1.62 8.14 -2.38 -0.02 1.61 16 32 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -79.10 280.62 5.05 -74.05 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.40 Total: 13.39 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 2.98 Total: -0.28 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -0.29 Total: -72.55 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.67 Total: 44.76 kcal Total: -79.10 5.05 -74.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.706 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds