Wall clock time and date at job start Mon Mar 30 2020 18:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46749 * 2 1 4 4 C 1.50702 * 109.46668 * 119.99452 * 2 1 3 5 5 H 1.08002 * 119.99621 * 120.00364 * 4 2 1 6 6 C 1.37876 * 120.00074 * 300.00151 * 4 2 1 7 7 N 1.31515 * 120.00134 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99888 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47635 * 59.99604 * 8 6 4 10 10 H 1.48503 * 109.47275 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46955 * 299.99781 * 8 6 4 12 12 C 1.50696 * 109.47153 * 239.99580 * 2 1 3 13 13 O 1.20830 * 120.00003 * 240.00160 * 12 2 1 14 14 O 1.34227 * 120.00298 * 60.00199 * 12 2 1 15 15 C 1.45199 * 117.00010 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47177 * 329.99893 * 15 14 12 17 17 C 1.50699 * 109.47289 * 89.99830 * 15 14 12 18 18 O 1.20829 * 120.00015 * 4.99896 * 17 15 14 19 19 O 1.34233 * 120.00100 * 184.99577 * 17 15 14 20 20 C 1.52997 * 109.47075 * 209.99849 * 15 14 12 21 21 C 1.53001 * 117.50135 * 128.74465 * 20 15 14 22 22 C 1.53000 * 117.49905 * 60.08475 * 20 15 14 23 23 H 1.09000 * 109.47499 * 300.00356 * 1 2 3 24 24 H 1.08999 * 109.47160 * 60.00485 * 1 2 3 25 25 H 1.09006 * 109.47412 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99821 * 180.02562 * 7 6 4 27 27 H 0.96698 * 116.99906 * 179.97438 * 19 17 15 28 28 H 1.09006 * 115.55153 * 274.41844 * 20 15 14 29 29 H 1.09002 * 117.49734 * 0.02562 * 21 20 15 30 30 H 1.08994 * 117.49847 * 145.02044 * 21 20 15 31 31 H 1.09001 * 117.49936 * 214.98052 * 22 20 15 32 32 H 1.08999 * 117.50086 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3222 -1.1192 4.0081 9 1 3.8072 -1.1188 4.0080 10 1 1.8276 -0.4188 5.2205 11 1 1.8277 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.7270 -1.6929 -1.1194 14 8 1.7081 -0.2520 -2.4496 15 6 2.2269 -0.9867 -3.5895 16 1 3.1796 -1.4446 -3.3236 17 6 1.2459 -2.0607 -3.9836 18 8 0.1764 -2.1360 -3.4264 19 8 1.5603 -2.9336 -4.9537 20 6 2.4321 -0.0276 -4.7638 21 6 3.7969 -0.0392 -5.4552 22 6 3.4010 1.1392 -4.5620 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7085 1.1615 3.4843 27 1 0.8991 -3.6048 -5.1713 28 1 1.5543 0.1489 -5.3856 29 1 4.5484 -0.7304 -5.0738 30 1 3.8170 0.1300 -6.5318 31 1 3.1609 2.0831 -5.0513 32 1 3.8919 1.2238 -3.5925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:57 Heat of formation + Delta-G solvation = -156.780739 kcal Electronic energy + Delta-G solvation = -17776.520630 eV Core-core repulsion = 14703.230430 eV Total energy + Delta-G solvation = -3073.290200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65863 -39.29134 -37.43476 -36.13834 -35.33250 -33.90656 -30.71511 -28.97785 -25.19101 -23.51774 -22.51646 -22.27419 -20.68522 -19.79603 -18.27038 -17.14261 -16.82092 -16.26083 -15.91020 -15.44978 -14.88848 -14.53118 -14.37225 -13.76560 -13.11621 -12.79759 -12.31288 -11.81845 -11.63216 -11.58532 -11.34961 -11.11242 -11.04148 -10.81791 -10.69331 -10.67471 -10.46753 -10.30662 -10.06299 -9.94159 -9.20352 -9.05399 -8.44706 -6.10436 -4.16390 2.21988 2.62335 3.11639 3.32564 3.35437 3.37264 3.41746 3.96684 4.40958 4.47516 4.72791 4.86318 4.91729 5.22665 5.30644 5.34151 5.54241 5.77420 5.94745 5.99359 6.06564 6.48111 6.70583 6.89255 6.90065 7.08038 7.45342 7.75426 7.89768 7.94840 8.13162 8.72269 8.91077 9.48894 10.96874 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.006316 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.904596 B = 4432.445718 C = 4660.440222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.066 0.934 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.515 6.515 14 O -0.330 6.330 15 C 0.124 3.876 16 H 0.117 0.883 17 C 0.468 3.532 18 O -0.492 6.492 19 O -0.512 6.512 20 C -0.152 4.152 21 C -0.163 4.163 22 C -0.158 4.158 23 H 0.096 0.904 24 H 0.025 0.975 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.409 0.591 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -0.825 -15.152 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 H 0.084 0.916 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.401 6.401 14 O -0.248 6.248 15 C 0.067 3.933 16 H 0.135 0.865 17 C 0.309 3.691 18 O -0.378 6.378 19 O -0.324 6.324 20 C -0.171 4.171 21 C -0.200 4.200 22 C -0.195 4.195 23 H 0.115 0.885 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.267 0.733 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.970 -0.735 -14.725 15.040 hybrid contribution -0.228 -1.111 0.640 1.302 sum 2.743 -1.845 -14.085 14.468 Atomic orbital electron populations 1.21723 0.95220 1.00340 1.01740 1.18794 0.95091 0.96910 0.84911 0.91596 1.21085 1.32147 1.13320 0.88748 0.90705 1.24928 0.94853 0.95016 0.99099 1.69872 1.36308 1.22749 1.24016 0.86420 0.79248 0.79698 0.81286 1.20067 1.21149 1.20081 1.25674 0.75928 0.83331 0.83858 1.90497 1.36610 1.26766 1.86272 1.86879 1.70536 1.53010 1.14351 1.21307 0.95864 0.89547 0.86589 0.86547 1.23701 0.87408 0.81448 0.76590 1.90774 1.24376 1.71134 1.51487 1.84509 1.51392 1.43122 1.53401 1.21938 0.95819 1.01281 0.98017 1.23094 0.95930 1.01845 0.99144 1.22963 1.01562 0.93059 1.01929 0.88534 0.95614 0.94851 0.92582 0.73262 0.86623 0.88173 0.87912 0.87906 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.90 37.16 0.33 -2.98 16 2 C 0.06 1.61 2.74 -92.92 -0.25 1.36 16 3 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 4 C -0.52 -14.67 8.37 -34.44 -0.29 -14.96 16 5 H 0.07 2.21 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.47 11.26 7.22 36.00 0.26 11.52 16 13 O -0.52 -13.25 14.68 -18.75 -0.28 -13.52 16 14 O -0.33 -6.80 9.24 -45.89 -0.42 -7.23 16 15 C 0.12 2.06 2.66 -27.88 -0.07 1.99 16 16 H 0.12 1.94 6.91 -51.93 -0.36 1.58 16 17 C 0.47 7.82 7.61 36.01 0.27 8.09 16 18 O -0.49 -10.07 17.27 -25.40 -0.44 -10.51 16 19 O -0.51 -6.22 13.42 -39.27 -0.53 -6.75 16 20 C -0.15 -1.90 5.38 -90.62 -0.49 -2.39 16 21 C -0.16 -1.59 10.18 -26.69 -0.27 -1.86 16 22 C -0.16 -1.76 10.17 -26.69 -0.27 -2.03 16 23 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 24 H 0.02 0.57 8.11 -51.93 -0.42 0.15 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.41 3.11 9.10 45.56 0.41 3.52 16 28 H 0.12 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -32.91 287.44 -5.73 -38.63 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.12 Total: 2.39 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.88 Total: 0.39 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.66 Total: -38.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.91 -5.73 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.146 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds