Wall clock time and date at job start Mon Mar 30 2020 18:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46749 * 2 1 4 4 C 1.50702 * 109.46668 * 119.99452 * 2 1 3 5 5 H 1.08002 * 119.99621 * 120.00364 * 4 2 1 6 6 C 1.37876 * 120.00074 * 300.00151 * 4 2 1 7 7 N 1.31515 * 120.00134 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99888 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47635 * 59.99604 * 8 6 4 10 10 H 1.48503 * 109.47275 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46955 * 299.99781 * 8 6 4 12 12 C 1.50696 * 109.47153 * 239.99580 * 2 1 3 13 13 O 1.20830 * 120.00003 * 240.00160 * 12 2 1 14 14 O 1.34227 * 120.00298 * 60.00199 * 12 2 1 15 15 C 1.45199 * 117.00010 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47177 * 329.99893 * 15 14 12 17 17 C 1.50699 * 109.47289 * 89.99830 * 15 14 12 18 18 O 1.20829 * 120.00015 * 4.99896 * 17 15 14 19 19 O 1.34233 * 120.00100 * 184.99577 * 17 15 14 20 20 C 1.52997 * 109.47075 * 209.99849 * 15 14 12 21 21 C 1.53001 * 117.50135 * 128.74465 * 20 15 14 22 22 C 1.53000 * 117.49905 * 60.08475 * 20 15 14 23 23 H 1.09000 * 109.47499 * 300.00356 * 1 2 3 24 24 H 1.08999 * 109.47160 * 60.00485 * 1 2 3 25 25 H 1.09006 * 109.47412 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99821 * 180.02562 * 7 6 4 27 27 H 0.96698 * 116.99906 * 179.97438 * 19 17 15 28 28 H 1.09006 * 115.55153 * 274.41844 * 20 15 14 29 29 H 1.09002 * 117.49734 * 0.02562 * 21 20 15 30 30 H 1.08994 * 117.49847 * 145.02044 * 21 20 15 31 31 H 1.09001 * 117.49936 * 214.98052 * 22 20 15 32 32 H 1.08999 * 117.50086 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3222 -1.1192 4.0081 9 1 3.8072 -1.1188 4.0080 10 1 1.8276 -0.4188 5.2205 11 1 1.8277 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.7270 -1.6929 -1.1194 14 8 1.7081 -0.2520 -2.4496 15 6 2.2269 -0.9867 -3.5895 16 1 3.1796 -1.4446 -3.3236 17 6 1.2459 -2.0607 -3.9836 18 8 0.1764 -2.1360 -3.4264 19 8 1.5603 -2.9336 -4.9537 20 6 2.4321 -0.0276 -4.7638 21 6 3.7969 -0.0392 -5.4552 22 6 3.4010 1.1392 -4.5620 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7085 1.1615 3.4843 27 1 0.8991 -3.6048 -5.1713 28 1 1.5543 0.1489 -5.3856 29 1 4.5484 -0.7304 -5.0738 30 1 3.8170 0.1300 -6.5318 31 1 3.1609 2.0831 -5.0513 32 1 3.8919 1.2238 -3.5925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:57 Heat of formation + Delta-G solvation = -177.618187 kcal Electronic energy + Delta-G solvation = -17777.424210 eV Core-core repulsion = 14703.230430 eV Total energy + Delta-G solvation = -3074.193779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.14221 -40.86556 -38.60120 -37.43792 -36.84211 -35.98659 -32.76275 -30.33471 -27.32483 -25.33172 -23.73187 -23.18744 -21.95808 -21.51100 -19.55326 -18.71029 -18.44430 -18.13122 -17.56890 -16.90969 -16.48461 -16.15039 -15.70783 -15.09635 -14.74823 -14.54536 -13.84474 -13.64264 -13.03630 -12.95421 -12.79272 -12.71845 -12.66739 -12.57891 -12.37769 -12.33772 -12.07554 -11.81725 -11.53977 -11.17512 -11.14442 -11.02926 -10.56070 -8.22354 -6.36496 0.91133 1.13724 1.39618 1.43143 1.44609 1.53858 2.00816 2.41074 2.93572 3.07608 3.40404 3.61920 3.81704 3.94136 4.18819 4.23988 4.36920 4.63019 4.79657 4.84234 4.93687 4.96457 5.09193 5.20388 5.24864 5.37538 5.39381 5.63743 5.81595 6.04313 6.68118 6.75675 6.89855 7.32153 8.84258 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.006316 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.904596 B = 4432.445718 C = 4660.440222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.474 3.526 13 O -0.538 6.538 14 O -0.331 6.331 15 C 0.114 3.886 16 H 0.115 0.885 17 C 0.475 3.525 18 O -0.538 6.538 19 O -0.491 6.491 20 C -0.170 4.170 21 C -0.135 4.135 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.020 0.980 26 H 0.270 0.730 27 H 0.432 0.568 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -0.886 -16.450 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.035 3.965 3 H 0.076 0.924 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.427 6.427 14 O -0.248 6.248 15 C 0.058 3.942 16 H 0.133 0.867 17 C 0.317 3.683 18 O -0.427 6.427 19 O -0.305 6.305 20 C -0.188 4.188 21 C -0.172 4.172 22 C -0.201 4.201 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.294 0.706 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.602 -0.798 -16.073 16.490 hybrid contribution -0.403 -1.107 0.897 1.481 sum 3.199 -1.905 -15.175 15.625 Atomic orbital electron populations 1.21542 0.94666 0.99492 1.01892 1.18702 0.95571 0.96493 0.85768 0.92373 1.21214 1.32998 1.13457 0.90417 0.92477 1.25660 0.94783 0.95640 1.01598 1.69948 1.36365 1.23325 1.24967 0.85497 0.78867 0.78517 0.78105 1.19576 1.19656 1.20133 1.25098 0.75455 0.82664 0.84766 1.90468 1.37639 1.27622 1.86999 1.86789 1.70323 1.53350 1.14349 1.21772 0.95402 0.90762 0.86304 0.86724 1.23645 0.86485 0.81577 0.76574 1.90765 1.26189 1.72432 1.53356 1.84444 1.51858 1.42811 1.51411 1.22010 0.97875 1.01742 0.97180 1.23255 0.93282 1.00143 1.00526 1.23059 1.00916 0.94173 1.01905 0.89959 0.93705 0.96050 0.92098 0.70580 0.85416 0.88008 0.84819 0.85789 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.90 71.98 0.64 -5.37 16 2 C 0.05 2.86 2.74 -12.29 -0.03 2.83 16 3 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 4 C -0.54 -31.60 8.37 25.60 0.21 -31.39 16 5 H 0.06 3.46 6.76 -2.91 -0.02 3.44 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -51.11 11.32 21.45 0.24 -50.87 16 8 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.47 23.34 7.22 71.23 0.51 23.86 16 13 O -0.54 -28.30 14.68 21.95 0.32 -27.98 16 14 O -0.33 -13.74 9.24 -45.04 -0.42 -14.16 16 15 C 0.11 3.71 2.66 29.85 0.08 3.79 16 16 H 0.12 3.77 6.91 -2.39 -0.02 3.75 16 17 C 0.48 15.42 7.61 71.24 0.54 15.96 16 18 O -0.54 -21.98 17.27 28.31 0.49 -21.49 16 19 O -0.49 -10.82 13.42 -51.45 -0.69 -11.51 16 20 C -0.17 -3.90 5.38 -10.79 -0.06 -3.96 16 21 C -0.14 -2.19 10.18 30.62 0.31 -1.88 16 22 C -0.16 -3.30 10.17 30.62 0.31 -2.99 16 23 H 0.08 4.41 6.07 -2.39 -0.01 4.39 16 24 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 25 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.43 5.46 9.10 -74.06 -0.67 4.79 16 28 H 0.13 2.63 8.11 -2.38 -0.02 2.61 16 29 H 0.10 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -71.27 287.44 5.41 -65.85 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.47 Total: 11.17 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 2.97 Total: 2.61 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.24 Total: -50.87 kcal Atomic # 8 Polarization: -74.84 SS G_CDS: -0.30 Total: -75.14 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.27 5.41 -65.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.767 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds