Wall clock time and date at job start Mon Mar 30 2020 18:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47290 * 239.99225 * 2 1 3 5 5 H 1.07997 * 119.99645 * 245.64341 * 4 2 1 6 6 C 1.37880 * 119.99723 * 65.64390 * 4 2 1 7 7 N 1.31507 * 119.99920 * 197.14678 * 6 4 2 8 8 Si 1.86804 * 120.00027 * 17.42759 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72362 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72109 * 8 6 4 11 11 H 1.48496 * 109.47239 * 59.71691 * 8 6 4 12 12 C 1.50703 * 109.46898 * 119.99195 * 2 1 3 13 13 O 1.20828 * 120.00094 * 120.00039 * 12 2 1 14 14 O 1.34229 * 120.00088 * 300.00469 * 12 2 1 15 15 C 1.45203 * 116.99681 * 180.02562 * 14 12 2 16 16 H 1.08994 * 109.47547 * 29.99915 * 15 14 12 17 17 C 1.50696 * 109.46866 * 269.99557 * 15 14 12 18 18 O 1.20823 * 120.00327 * 0.02562 * 17 15 14 19 19 O 1.34238 * 119.99885 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.46862 * 149.99796 * 15 14 12 21 21 C 1.52996 * 117.49864 * 248.74172 * 20 15 14 22 22 C 1.53003 * 117.49832 * 180.08383 * 20 15 14 23 23 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 24 24 H 1.08994 * 109.46391 * 66.32549 * 1 2 3 25 25 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 26 26 H 0.97004 * 120.00063 * 355.22222 * 7 6 4 27 27 H 0.96695 * 116.99710 * 180.02562 * 19 17 15 28 28 H 1.08999 * 115.54813 * 34.41721 * 20 15 14 29 29 H 1.08997 * 117.49963 * 0.02562 * 21 20 15 30 30 H 1.09001 * 117.49827 * 145.02138 * 21 20 15 31 31 H 1.08994 * 117.50041 * 214.97844 * 22 20 15 32 32 H 1.08994 * 117.49703 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7106 -1.2303 5 1 2.5761 -1.6387 -1.1337 6 6 1.7980 -0.1757 -2.4793 7 7 1.9235 -0.9277 -3.5508 8 14 1.3096 1.6193 -2.6501 9 1 1.1231 1.9471 -4.0863 10 1 0.0394 1.8583 -1.9188 11 1 2.3779 2.4793 -2.0806 12 6 2.0324 -0.7103 1.2306 13 8 2.7270 -1.6927 1.1199 14 8 1.7080 -0.2516 2.4497 15 6 2.2276 -0.9854 3.5898 16 1 3.1807 -1.4426 3.3240 17 6 1.2476 -2.0599 3.9845 18 8 0.2172 -2.1940 3.3680 19 8 1.5195 -2.8683 5.0212 20 6 2.4323 -0.0256 4.7637 21 6 3.8712 0.2721 5.1902 22 6 2.9797 -0.6105 6.0673 23 1 -0.3633 0.6087 0.8280 24 1 -0.3632 0.4126 -0.9412 25 1 -0.3633 -1.0214 0.1131 26 1 2.2477 -1.8383 -3.4690 27 1 0.8608 -3.5427 5.2364 28 1 1.7067 0.7841 4.8409 29 1 4.6720 -0.2154 4.6342 30 1 4.0921 1.2776 5.5484 31 1 2.6145 -0.1853 7.0021 32 1 3.1935 -1.6790 6.0887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:02 Heat of formation + Delta-G solvation = -155.870747 kcal Electronic energy + Delta-G solvation = -17813.782429 eV Core-core repulsion = 14740.531689 eV Total energy + Delta-G solvation = -3073.250740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.78113 -39.40110 -37.50257 -36.27770 -35.47766 -33.96499 -31.27795 -29.00777 -24.86697 -23.67527 -22.68478 -22.36544 -20.58876 -19.76430 -18.30456 -17.48429 -17.04317 -16.86424 -16.27291 -15.49057 -14.88295 -14.67772 -14.09828 -13.81729 -13.38220 -12.80667 -12.55788 -11.98085 -11.77073 -11.74426 -11.58026 -11.41319 -11.29560 -11.07089 -10.76002 -10.65542 -10.52011 -10.24015 -9.94899 -9.80699 -9.36679 -8.94299 -8.27489 -6.54344 -4.13684 2.14917 2.54972 3.00920 3.22132 3.35620 3.39271 3.57019 3.81061 4.40471 4.43845 4.65673 4.73463 4.92812 5.20428 5.20939 5.24289 5.49901 5.65428 5.75419 5.93951 5.98796 6.22936 6.41195 6.46547 6.53784 6.79233 6.98665 7.23584 7.75514 7.84554 8.38166 8.59067 8.91971 9.55460 10.88528 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.006476 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.782902 B = 4322.425609 C = 4576.309616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.036 3.964 3 H 0.058 0.942 4 C -0.601 4.601 5 H 0.076 0.924 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 1.041 2.959 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.475 3.525 13 O -0.504 6.504 14 O -0.334 6.334 15 C 0.126 3.874 16 H 0.119 0.881 17 C 0.469 3.531 18 O -0.494 6.494 19 O -0.511 6.511 20 C -0.157 4.157 21 C -0.168 4.168 22 C -0.160 4.160 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.270 0.730 27 H 0.408 0.592 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 2.645 18.948 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.639 4.639 5 H 0.094 0.906 6 C -0.171 4.171 7 N -0.531 5.531 8 Si 0.868 3.132 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.319 3.681 13 O -0.389 6.389 14 O -0.252 6.252 15 C 0.069 3.931 16 H 0.136 0.864 17 C 0.309 3.691 18 O -0.379 6.379 19 O -0.324 6.324 20 C -0.175 4.175 21 C -0.205 4.205 22 C -0.197 4.197 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.267 0.733 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.332 3.727 17.521 17.916 hybrid contribution 0.068 -1.874 1.248 2.252 sum 0.400 1.852 18.769 18.864 Atomic orbital electron populations 1.22147 0.95705 1.01281 1.01069 1.19098 0.94626 0.96999 0.87654 0.92455 1.21958 1.41434 1.11028 0.89459 0.90635 1.25767 0.94510 1.05132 0.91682 1.70841 1.40996 1.10123 1.31123 0.84111 0.77327 0.75141 0.76589 1.20722 1.19665 1.20656 1.25040 0.76215 0.83369 0.83449 1.90523 1.35947 1.26311 1.86140 1.86814 1.70582 1.53264 1.14508 1.21368 0.95745 0.89630 0.86372 0.86388 1.23715 0.86814 0.81378 0.77163 1.90769 1.26437 1.69077 1.51641 1.84512 1.53132 1.45977 1.48777 1.22021 0.99723 1.01943 0.93859 1.23154 0.92553 1.01624 1.03132 1.23111 1.02578 1.00719 0.93316 0.94298 0.91360 0.93134 0.91935 0.73269 0.85834 0.88192 0.87936 0.88080 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.80 37.16 0.33 -2.96 16 2 C 0.04 0.89 2.32 -92.92 -0.22 0.67 16 3 H 0.06 1.33 6.80 -51.93 -0.35 0.98 16 4 C -0.60 -17.50 8.63 -34.44 -0.30 -17.80 16 5 H 0.08 2.46 7.02 -52.49 -0.37 2.09 16 6 C 0.03 1.01 5.29 -17.82 -0.09 0.91 16 7 N -0.90 -27.68 13.70 55.43 0.76 -26.92 16 8 Si 1.04 24.41 26.29 -169.99 -4.47 19.94 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.27 -5.76 5.76 56.52 0.33 -5.43 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.48 11.29 7.17 36.01 0.26 11.55 16 13 O -0.50 -13.13 14.69 -18.75 -0.28 -13.41 16 14 O -0.33 -6.64 9.36 -45.91 -0.43 -7.07 16 15 C 0.13 2.03 2.72 -27.88 -0.08 1.95 16 16 H 0.12 1.92 6.91 -51.93 -0.36 1.56 16 17 C 0.47 7.52 7.66 36.00 0.28 7.80 16 18 O -0.49 -9.86 17.22 -25.41 -0.44 -10.30 16 19 O -0.51 -5.71 11.36 -39.28 -0.45 -6.16 16 20 C -0.16 -1.86 5.50 -90.62 -0.50 -2.36 16 21 C -0.17 -1.61 10.18 -26.70 -0.27 -1.88 16 22 C -0.16 -1.45 9.45 -26.69 -0.25 -1.70 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.55 4.88 -51.93 -0.25 1.29 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.27 8.41 8.73 -40.82 -0.36 8.05 16 27 H 0.41 2.82 9.10 45.56 0.41 3.23 16 28 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.00 6.85 -51.93 -0.36 0.65 16 LS Contribution 279.34 15.07 4.21 4.21 Total: -1.00 -34.81 279.34 -4.97 -39.77 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.03 Total: 3.76 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.84 Total: -3.82 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.59 Total: -36.94 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.47 Total: 19.94 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.81 -4.97 -39.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.097 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds