Wall clock time and date at job start Mon Mar 30 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47290 * 239.99225 * 2 1 3 5 5 H 1.07997 * 119.99645 * 245.64341 * 4 2 1 6 6 C 1.37880 * 119.99723 * 65.64390 * 4 2 1 7 7 N 1.31507 * 119.99920 * 197.14678 * 6 4 2 8 8 Si 1.86804 * 120.00027 * 17.42759 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72362 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72109 * 8 6 4 11 11 H 1.48496 * 109.47239 * 59.71691 * 8 6 4 12 12 C 1.50703 * 109.46898 * 119.99195 * 2 1 3 13 13 O 1.20828 * 120.00094 * 120.00039 * 12 2 1 14 14 O 1.34229 * 120.00088 * 300.00469 * 12 2 1 15 15 C 1.45203 * 116.99681 * 180.02562 * 14 12 2 16 16 H 1.08994 * 109.47547 * 29.99915 * 15 14 12 17 17 C 1.50696 * 109.46866 * 269.99557 * 15 14 12 18 18 O 1.20823 * 120.00327 * 0.02562 * 17 15 14 19 19 O 1.34238 * 119.99885 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.46862 * 149.99796 * 15 14 12 21 21 C 1.52996 * 117.49864 * 248.74172 * 20 15 14 22 22 C 1.53003 * 117.49832 * 180.08383 * 20 15 14 23 23 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 24 24 H 1.08994 * 109.46391 * 66.32549 * 1 2 3 25 25 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 26 26 H 0.97004 * 120.00063 * 355.22222 * 7 6 4 27 27 H 0.96695 * 116.99710 * 180.02562 * 19 17 15 28 28 H 1.08999 * 115.54813 * 34.41721 * 20 15 14 29 29 H 1.08997 * 117.49963 * 0.02562 * 21 20 15 30 30 H 1.09001 * 117.49827 * 145.02138 * 21 20 15 31 31 H 1.08994 * 117.50041 * 214.97844 * 22 20 15 32 32 H 1.08994 * 117.49703 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7106 -1.2303 5 1 2.5761 -1.6387 -1.1337 6 6 1.7980 -0.1757 -2.4793 7 7 1.9235 -0.9277 -3.5508 8 14 1.3096 1.6193 -2.6501 9 1 1.1231 1.9471 -4.0863 10 1 0.0394 1.8583 -1.9188 11 1 2.3779 2.4793 -2.0806 12 6 2.0324 -0.7103 1.2306 13 8 2.7270 -1.6927 1.1199 14 8 1.7080 -0.2516 2.4497 15 6 2.2276 -0.9854 3.5898 16 1 3.1807 -1.4426 3.3240 17 6 1.2476 -2.0599 3.9845 18 8 0.2172 -2.1940 3.3680 19 8 1.5195 -2.8683 5.0212 20 6 2.4323 -0.0256 4.7637 21 6 3.8712 0.2721 5.1902 22 6 2.9797 -0.6105 6.0673 23 1 -0.3633 0.6087 0.8280 24 1 -0.3632 0.4126 -0.9412 25 1 -0.3633 -1.0214 0.1131 26 1 2.2477 -1.8383 -3.4690 27 1 0.8608 -3.5427 5.2364 28 1 1.7067 0.7841 4.8409 29 1 4.6720 -0.2154 4.6342 30 1 4.0921 1.2776 5.5484 31 1 2.6145 -0.1853 7.0021 32 1 3.1935 -1.6790 6.0887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:59 Heat of formation + Delta-G solvation = -180.401183 kcal Electronic energy + Delta-G solvation = -17814.846149 eV Core-core repulsion = 14740.531689 eV Total energy + Delta-G solvation = -3074.314459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22032 -40.94384 -38.57684 -37.59964 -36.88963 -36.03826 -33.37767 -30.28829 -26.92058 -25.40381 -23.89719 -23.18288 -21.72037 -21.55410 -19.63216 -19.52542 -18.61402 -18.39624 -17.55918 -16.94284 -16.42185 -16.00807 -15.47293 -15.19044 -14.88888 -14.64223 -14.18122 -13.84676 -13.42924 -13.23787 -12.87170 -12.76623 -12.61402 -12.41556 -12.31580 -12.11986 -11.90242 -11.62842 -11.55417 -11.17614 -11.06032 -11.04277 -10.46452 -8.87250 -6.47826 0.89217 1.05840 1.37090 1.50108 1.58539 1.77170 1.92358 2.49964 2.88123 3.00827 3.36867 3.65925 3.78117 3.85634 4.08892 4.23087 4.33518 4.33920 4.55245 4.77591 4.81572 4.96177 4.99233 5.10633 5.20119 5.27208 5.36962 5.39792 5.68428 5.97598 6.48821 6.69878 6.81710 7.32441 8.54825 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.006476 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.782902 B = 4322.425609 C = 4576.309616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 H 0.086 0.914 4 C -0.613 4.613 5 H 0.021 0.979 6 C -0.014 4.014 7 N -0.927 5.927 8 Si 1.082 2.918 9 H -0.286 1.286 10 H -0.229 1.229 11 H -0.253 1.253 12 C 0.478 3.522 13 O -0.541 6.541 14 O -0.328 6.328 15 C 0.116 3.884 16 H 0.112 0.888 17 C 0.475 3.525 18 O -0.541 6.541 19 O -0.489 6.489 20 C -0.177 4.177 21 C -0.162 4.162 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.250 0.750 27 H 0.431 0.569 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 5.014 21.584 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.103 0.897 4 C -0.650 4.650 5 H 0.040 0.960 6 C -0.212 4.212 7 N -0.562 5.562 8 Si 0.899 3.101 9 H -0.211 1.211 10 H -0.153 1.153 11 H -0.178 1.178 12 C 0.324 3.676 13 O -0.429 6.429 14 O -0.245 6.245 15 C 0.059 3.941 16 H 0.129 0.871 17 C 0.317 3.683 18 O -0.431 6.431 19 O -0.303 6.303 20 C -0.195 4.195 21 C -0.199 4.199 22 C -0.176 4.176 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.293 0.707 28 H 0.149 0.851 29 H 0.112 0.888 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.195 6.065 20.238 21.128 hybrid contribution 0.319 -2.764 0.588 2.844 sum 0.124 3.301 20.826 21.087 Atomic orbital electron populations 1.22041 0.93774 1.00858 1.02717 1.19072 0.96014 0.97713 0.86529 0.89666 1.21996 1.41159 1.09558 0.92268 0.96033 1.27494 0.93559 1.09264 0.90925 1.70994 1.43303 1.09489 1.32376 0.83688 0.79793 0.69377 0.77206 1.21141 1.15262 1.17786 1.24754 0.75527 0.82626 0.84716 1.90508 1.37632 1.27816 1.86988 1.86719 1.70201 1.53316 1.14229 1.21823 0.95104 0.90905 0.86231 0.87052 1.23704 0.85887 0.81398 0.77294 1.90758 1.28372 1.70470 1.53453 1.84450 1.53546 1.45759 1.46553 1.22053 1.01738 1.02148 0.93612 1.23292 0.90997 1.02984 1.02592 1.23246 1.00668 1.00796 0.92846 0.90701 0.90991 0.95181 0.94103 0.70670 0.85111 0.88791 0.85791 0.85488 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 8.80 71.99 0.63 -5.34 16 2 C 0.03 1.28 2.32 -12.28 -0.03 1.25 16 3 H 0.09 3.72 6.80 -2.39 -0.02 3.70 16 4 C -0.61 -36.70 8.63 25.60 0.22 -36.48 16 5 H 0.02 1.48 7.02 -2.91 -0.02 1.46 16 6 C -0.01 -0.84 5.29 84.66 0.45 -0.39 16 7 N -0.93 -59.13 13.70 21.45 0.29 -58.84 16 8 Si 1.08 47.29 26.29 68.60 1.80 49.09 16 9 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.23 -8.50 5.76 99.48 0.57 -7.93 16 11 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 12 C 0.48 22.88 7.17 71.24 0.51 23.39 16 13 O -0.54 -29.25 14.69 21.96 0.32 -28.93 16 14 O -0.33 -12.75 9.36 -45.04 -0.42 -13.18 16 15 C 0.12 3.62 2.72 29.85 0.08 3.70 16 16 H 0.11 3.63 6.91 -2.39 -0.02 3.61 16 17 C 0.47 14.77 7.66 71.23 0.55 15.31 16 18 O -0.54 -21.51 17.22 28.34 0.49 -21.02 16 19 O -0.49 -9.86 11.36 -51.49 -0.59 -10.45 16 20 C -0.18 -3.75 5.50 -10.79 -0.06 -3.81 16 21 C -0.16 -2.62 10.18 30.62 0.31 -2.31 16 22 C -0.14 -2.01 9.45 30.62 0.29 -1.73 16 23 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.07 3.06 4.88 -2.39 -0.01 3.05 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.25 16.50 8.73 -92.71 -0.81 15.69 16 27 H 0.43 4.88 9.10 -74.06 -0.67 4.20 16 28 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.09 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.62 6.85 -2.39 -0.02 1.61 16 Total: -1.00 -79.73 279.34 5.16 -74.57 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.31 Total: 15.15 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 2.95 Total: -6.40 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.29 Total: -58.84 kcal Atomic # 8 Polarization: -73.38 SS G_CDS: -0.20 Total: -73.57 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.80 Total: 49.09 kcal Total: -79.73 5.16 -74.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.831 kcal (2) G-P(sol) polarization free energy of solvation -79.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds