Wall clock time and date at job start Mon Mar 30 2020 18:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 H 1.08992 * 109.47119 * 29.99855 * 15 14 12 17 17 C 1.50699 * 109.46870 * 269.99564 * 15 14 12 18 18 O 1.20827 * 120.00316 * 0.02562 * 17 15 14 19 19 O 1.34227 * 119.99977 * 180.02562 * 17 15 14 20 20 C 1.53002 * 109.47248 * 149.99804 * 15 14 12 21 21 C 1.52995 * 117.49915 * 248.74767 * 20 15 14 22 22 C 1.52997 * 117.50187 * 180.08204 * 20 15 14 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96700 * 117.00486 * 180.02562 * 19 17 15 28 28 H 1.09008 * 115.54473 * 34.41506 * 20 15 14 29 29 H 1.08999 * 117.49806 * 359.97438 * 21 20 15 30 30 H 1.09001 * 117.49974 * 145.01863 * 21 20 15 31 31 H 1.08996 * 117.50433 * 214.98161 * 22 20 15 32 32 H 1.09003 * 117.49688 * 0.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 1 2.3401 -2.0370 -3.3238 17 6 3.5666 -0.4203 -3.9844 18 8 4.0364 0.5065 -3.3677 19 8 4.2381 -0.9460 -5.0209 20 6 1.2538 -0.8592 -4.7637 21 6 0.4935 -2.1165 -5.1902 22 6 1.6229 -1.5701 -6.0672 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 5.0936 -0.5499 -5.2361 28 1 0.7323 0.0949 -4.8409 29 1 0.6867 -3.0342 -4.6347 30 1 -0.5281 -1.9896 -5.5485 31 1 1.3439 -1.0841 -7.0021 32 1 2.5587 -2.1286 -6.0884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:03 Heat of formation + Delta-G solvation = -178.131912 kcal Electronic energy + Delta-G solvation = -17732.741280 eV Core-core repulsion = 14658.525224 eV Total energy + Delta-G solvation = -3074.216056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15105 -40.87491 -38.52484 -37.54883 -36.83599 -35.98142 -32.76055 -30.18249 -27.31060 -25.33444 -23.88626 -23.15961 -21.82127 -21.57241 -19.46931 -18.82121 -18.21005 -18.09763 -17.70396 -16.91805 -16.43272 -16.30958 -15.58440 -15.06465 -14.80111 -14.42264 -14.11983 -13.49739 -13.02444 -12.88513 -12.83905 -12.71788 -12.64887 -12.56377 -12.32202 -12.28336 -12.07475 -11.87480 -11.54582 -11.16294 -11.07585 -11.00353 -10.56259 -8.22191 -6.36461 0.92527 1.15878 1.39641 1.43410 1.46018 1.54605 1.98259 2.41424 2.91995 3.07640 3.41083 3.70592 3.84631 3.91196 4.16080 4.27113 4.41894 4.65344 4.83266 4.85477 4.95347 4.99423 5.12451 5.24747 5.29492 5.38524 5.41128 5.64983 5.84845 6.05829 6.68143 6.76416 6.89715 7.32139 8.84384 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.006074 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.304065 B = 4608.429713 C = 4900.295673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 H 0.045 0.955 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.270 1.270 11 H -0.276 1.276 12 C 0.477 3.523 13 O -0.538 6.538 14 O -0.334 6.334 15 C 0.116 3.884 16 H 0.116 0.884 17 C 0.476 3.524 18 O -0.544 6.544 19 O -0.488 6.488 20 C -0.180 4.180 21 C -0.161 4.161 22 C -0.137 4.137 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.270 0.730 27 H 0.431 0.569 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -4.119 -17.186 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.032 3.968 3 H 0.063 0.937 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.546 5.546 8 Si 0.791 3.209 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.322 3.678 13 O -0.427 6.427 14 O -0.251 6.251 15 C 0.060 3.940 16 H 0.133 0.867 17 C 0.318 3.682 18 O -0.434 6.434 19 O -0.302 6.302 20 C -0.198 4.198 21 C -0.198 4.198 22 C -0.174 4.174 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.293 0.707 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.526 -4.219 -16.797 17.326 hybrid contribution 1.190 0.078 0.962 1.532 sum 0.663 -4.141 -15.835 16.381 Atomic orbital electron populations 1.21569 0.93691 1.00312 1.02190 1.18717 0.96432 0.95858 0.85779 0.93683 1.21207 1.32989 1.13438 0.90410 0.92489 1.25677 0.94803 0.95653 1.01632 1.69958 1.36461 1.23277 1.24941 0.85480 0.78559 0.78800 0.78037 1.19657 1.19489 1.20194 1.25065 0.75734 0.82318 0.84660 1.90461 1.37387 1.27844 1.86969 1.86750 1.68075 1.55717 1.14520 1.21812 0.88749 0.97261 0.86226 0.86653 1.23722 0.87129 0.80058 0.77250 1.90761 1.69278 1.29732 1.53616 1.84447 1.38144 1.61085 1.46487 1.22038 1.03021 1.00895 0.93879 1.23289 0.98780 0.95118 1.02585 1.23248 1.00167 1.01249 0.92703 0.93126 0.94618 0.90232 0.92120 0.70680 0.85688 0.88528 0.86018 0.85626 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.90 71.98 0.64 -5.11 16 2 C 0.05 2.75 2.74 -12.29 -0.03 2.72 16 3 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 4 C -0.54 -31.77 8.37 25.60 0.21 -31.55 16 5 H 0.06 3.47 6.76 -2.91 -0.02 3.45 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -51.41 11.32 21.45 0.24 -51.17 16 8 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.48 23.69 7.17 71.24 0.51 24.20 16 13 O -0.54 -28.50 14.68 21.98 0.32 -28.18 16 14 O -0.33 -14.00 9.33 -45.03 -0.42 -14.42 16 15 C 0.12 3.79 2.72 29.85 0.08 3.87 16 16 H 0.12 3.81 6.91 -2.39 -0.02 3.79 16 17 C 0.48 15.34 7.66 71.24 0.55 15.89 16 18 O -0.54 -22.55 17.22 28.33 0.49 -22.06 16 19 O -0.49 -10.07 11.36 -51.39 -0.58 -10.65 16 20 C -0.18 -4.15 5.49 -10.80 -0.06 -4.20 16 21 C -0.16 -2.81 10.18 30.62 0.31 -2.49 16 22 C -0.14 -2.13 9.45 30.62 0.29 -1.84 16 23 H 0.05 2.11 8.11 -2.38 -0.02 2.09 16 24 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 4.11 6.07 -2.39 -0.01 4.10 16 26 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.43 5.03 9.10 -74.06 -0.67 4.35 16 28 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 29 H 0.10 1.76 8.05 -2.39 -0.02 1.74 16 30 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.71 6.85 -2.39 -0.02 1.70 16 Total: -1.00 -72.00 283.65 5.50 -66.50 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.47 Total: 10.24 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 2.95 Total: 3.18 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.24 Total: -51.17 kcal Atomic # 8 Polarization: -75.12 SS G_CDS: -0.19 Total: -75.31 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.00 5.50 -66.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.634 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds