Wall clock time and date at job start Mon Mar 30 2020 18:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47055 * 269.99837 * 3 2 1 5 5 H 1.48494 * 109.47265 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.46901 * 150.00350 * 3 2 1 7 7 C 1.37881 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99740 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99872 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46788 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00137 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99852 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00432 * 179.71953 * 12 11 10 15 15 C 1.50708 * 112.84704 * 50.60950 * 14 12 11 16 16 O 1.20821 * 120.00089 * 129.66292 * 15 14 12 17 17 O 1.34227 * 120.00187 * 309.67115 * 15 14 12 18 18 C 1.53783 * 113.61912 * 279.41790 * 14 12 11 19 19 C 1.53950 * 87.01778 * 220.04582 * 18 14 12 20 20 C 1.53775 * 87.11562 * 25.35842 * 19 18 14 21 21 H 0.97005 * 119.99853 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46801 * 60.00051 * 9 7 2 23 23 H 1.08997 * 109.47158 * 299.99848 * 9 7 2 24 24 H 1.08997 * 109.46911 * 60.00164 * 10 9 7 25 25 H 1.08997 * 109.46745 * 300.00173 * 10 9 7 26 26 H 0.96696 * 117.00146 * 179.97438 * 17 15 14 27 27 H 1.09007 * 113.60883 * 334.56349 * 18 14 12 28 28 H 1.08999 * 113.61552 * 105.46132 * 18 14 12 29 29 H 1.08998 * 113.53495 * 270.80627 * 19 18 14 30 30 H 1.08996 * 113.74259 * 139.94449 * 19 18 14 31 31 H 1.09001 * 113.61506 * 220.09071 * 20 19 18 32 32 H 1.09003 * 113.68938 * 89.19737 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 8 5.4735 -2.6367 -0.0009 12 6 6.0828 -3.8326 -0.0003 13 8 5.4247 -4.8460 -0.0003 14 6 7.5877 -3.9116 -0.0066 15 6 8.2229 -3.0592 1.0617 16 8 9.0522 -3.5348 1.8004 17 8 7.8672 -1.7715 1.1926 18 6 8.2091 -3.7175 -1.3998 19 6 9.1997 -4.8348 -1.0253 20 6 8.1290 -5.3503 -0.0493 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6805 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 3.6578 -3.1506 -0.8907 25 1 3.6584 -3.1502 0.8892 26 1 8.3017 -1.2650 1.8923 27 1 7.5392 -3.9838 -2.2176 28 1 8.6791 -2.7435 -1.5365 29 1 10.1008 -4.4703 -0.5322 30 1 9.4136 -5.5236 -1.8425 31 1 8.5346 -5.6928 0.9027 32 1 7.4367 -6.0641 -0.4958 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:34 Heat of formation + Delta-G solvation = -161.201711 kcal Electronic energy + Delta-G solvation = -17543.342489 eV Core-core repulsion = 14469.860582 eV Total energy + Delta-G solvation = -3073.481908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52834 -39.77644 -38.07609 -36.21062 -36.08800 -33.33238 -30.86116 -28.47537 -26.10752 -25.19597 -23.26275 -21.68292 -20.65842 -19.54738 -18.36429 -17.83663 -16.97893 -16.57919 -16.22403 -15.77330 -15.43111 -14.80445 -14.24134 -13.78401 -13.56551 -13.04398 -12.81805 -12.53719 -12.45839 -11.72941 -11.71462 -11.56462 -11.33229 -11.26793 -10.86011 -10.76218 -10.72090 -10.53555 -9.99370 -9.91151 -9.73853 -9.36510 -8.63935 -6.14545 -4.15893 1.74266 2.21563 2.82811 2.94535 3.26699 3.34163 3.38821 3.85983 4.06440 4.37243 4.37293 4.69107 4.97162 5.18464 5.19180 5.33513 5.40242 5.55533 5.58474 5.70820 5.90245 5.92667 5.98857 6.27912 6.41566 6.68220 7.14004 7.20396 7.60140 7.68035 7.97410 8.37785 8.86972 9.44981 10.98008 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.005599 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.507996 B = 4999.555615 C = 5380.047532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.080 3.920 11 O -0.342 6.342 12 C 0.474 3.526 13 O -0.500 6.500 14 C -0.089 4.089 15 C 0.512 3.488 16 O -0.506 6.506 17 O -0.489 6.489 18 C -0.106 4.106 19 C -0.142 4.142 20 C -0.101 4.101 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.413 0.587 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.264 -5.706 -1.434 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.008 3.992 11 O -0.257 6.257 12 C 0.315 3.685 13 O -0.388 6.388 14 C -0.091 4.091 15 C 0.353 3.647 16 O -0.394 6.394 17 O -0.299 6.299 18 C -0.143 4.143 19 C -0.179 4.179 20 C -0.138 4.138 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.876 -6.201 -1.535 19.927 hybrid contribution 0.315 1.233 0.547 1.385 sum 19.191 -4.967 -0.988 19.848 Atomic orbital electron populations 1.69896 1.06299 1.27225 1.50082 1.24932 0.94756 0.99182 0.94097 0.86752 0.80458 0.83257 0.78764 1.20042 1.21190 1.18687 1.20846 0.88279 0.95044 1.52455 0.90666 1.19611 0.96897 0.90002 0.98001 1.23469 0.72101 1.01848 1.01826 1.86579 1.26208 1.30999 1.81923 1.22532 0.89667 0.82800 0.73464 1.90666 1.66180 1.36701 1.45274 1.21743 0.90100 0.99479 0.97786 1.21993 0.79042 0.81073 0.82549 1.90715 1.31896 1.73668 1.43104 1.84661 1.65544 1.22941 1.56746 1.22962 0.98049 1.01266 0.92052 1.22975 0.97325 0.97949 0.99668 1.22949 0.97509 0.91262 1.02091 0.92419 0.95295 0.95720 0.91564 0.91659 0.72792 0.87613 0.89248 0.89274 0.89666 0.88946 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.72 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.18 4.42 -27.88 -0.12 -0.31 16 10 C 0.08 1.70 5.40 37.16 0.20 1.90 16 11 O -0.34 -6.44 9.35 -43.68 -0.41 -6.85 16 12 C 0.47 7.98 7.00 36.00 0.25 8.24 16 13 O -0.50 -9.44 15.66 -18.76 -0.29 -9.73 16 14 C -0.09 -1.14 1.27 -156.00 -0.20 -1.34 16 15 C 0.51 6.68 7.10 36.01 0.26 6.94 16 16 O -0.51 -7.20 16.59 -18.75 -0.31 -7.51 16 17 O -0.49 -5.79 12.55 -43.69 -0.55 -6.34 16 18 C -0.11 -1.03 7.22 -25.83 -0.19 -1.22 16 19 C -0.14 -1.19 7.76 -25.83 -0.20 -1.39 16 20 C -0.10 -1.09 6.78 -25.92 -0.18 -1.27 16 21 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 23 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 24 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 25 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 26 H 0.41 2.85 9.10 45.56 0.41 3.27 16 27 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 28 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 32 H 0.11 1.20 7.45 -51.93 -0.39 0.81 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -33.38 282.18 -5.05 -38.43 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.24 Total: -0.65 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.60 Total: -1.71 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.56 Total: -30.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.38 -5.05 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.773 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds