Wall clock time and date at job start Mon Mar 30 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48495 * 109.47618 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47256 * 120.00292 * 3 2 1 6 6 H 1.48498 * 109.47226 * 239.99901 * 3 2 1 7 7 C 1.38809 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99810 * 158.72440 * 7 2 1 9 9 N 1.36932 * 120.00501 * 338.73241 * 7 2 1 10 10 C 1.46503 * 119.99521 * 343.72467 * 9 7 2 11 11 C 1.50700 * 109.47446 * 96.03170 * 10 9 7 12 12 O 1.20824 * 119.99705 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00390 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00376 * 163.72550 * 9 7 2 15 15 C 1.52994 * 109.47223 * 90.00057 * 14 9 7 16 16 H 1.09005 * 110.21444 * 294.51929 * 15 14 9 17 17 C 1.54479 * 110.24558 * 172.50452 * 15 14 9 18 18 C 1.54628 * 101.76501 * 266.40969 * 17 15 14 19 19 C 1.51283 * 104.19690 * 335.20575 * 18 17 15 20 20 O 1.21276 * 124.94726 * 196.27016 * 19 18 17 21 21 N 1.34420 * 110.11265 * 16.24800 * 19 18 17 22 22 H 0.97000 * 119.99388 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46847 * 216.03059 * 10 9 7 24 24 H 1.09005 * 109.47389 * 336.02759 * 10 9 7 25 25 H 0.96699 * 116.99975 * 180.02562 * 13 11 10 26 26 H 1.09003 * 109.47004 * 209.99932 * 14 9 7 27 27 H 1.09000 * 109.47222 * 329.99677 * 14 9 7 28 28 H 1.08996 * 110.97570 * 24.52980 * 17 15 14 29 29 H 1.09000 * 110.97084 * 148.29524 * 17 15 14 30 30 H 1.08996 * 110.49254 * 216.52754 * 18 17 15 31 31 H 1.09005 * 110.59554 * 93.93621 * 18 17 15 32 32 H 0.97002 * 124.35052 * 180.43030 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0351 -1.2341 -0.3388 9 7 1.3956 -2.3475 0.4312 10 6 0.1597 -2.2657 1.2135 11 6 -1.0262 -2.4285 0.2979 12 8 -0.8563 -2.5951 -0.8867 13 8 -2.2710 -2.3882 0.7983 14 6 1.9739 -3.6545 0.1097 15 6 2.9483 -4.0669 1.2147 16 1 3.8006 -3.3877 1.2381 17 6 3.4258 -5.5190 0.9920 18 6 2.4208 -6.3171 1.8545 19 6 1.9553 -5.3239 2.8964 20 8 1.3834 -5.6136 3.9258 21 7 2.2682 -4.0734 2.5152 22 1 -0.4849 0.8401 0.0004 23 1 0.1512 -3.0570 1.9631 24 1 0.1063 -1.2959 1.7083 25 1 -2.9997 -2.4978 0.1720 26 1 1.1777 -4.3950 0.0324 27 1 2.5060 -3.5928 -0.8396 28 1 3.3466 -5.7990 -0.0584 29 1 4.4447 -5.6546 1.3545 30 1 2.9145 -7.1648 2.3295 31 1 1.5805 -6.6566 1.2488 32 1 2.0703 -3.2776 3.0333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:08 Heat of formation + Delta-G solvation = -102.991145 kcal Electronic energy + Delta-G solvation = -18333.047676 eV Core-core repulsion = 15294.382719 eV Total energy + Delta-G solvation = -3038.664957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03413 -38.69886 -36.67393 -35.23357 -34.33368 -31.45957 -31.00578 -28.79324 -26.96863 -24.84442 -22.33790 -20.81718 -20.10076 -19.95915 -17.27046 -16.75179 -16.68025 -15.82579 -15.20370 -14.94071 -14.70536 -14.16611 -13.69671 -13.68968 -13.15130 -12.96009 -12.76937 -12.39095 -11.76895 -11.50926 -11.33069 -11.17279 -10.81590 -10.69415 -10.54874 -10.24813 -10.10561 -9.97939 -9.53307 -9.29973 -8.87928 -8.53080 -7.10668 -6.00571 -3.35623 2.93906 3.30238 3.36825 3.37779 3.81552 3.84991 4.23424 4.50244 4.65346 4.72926 5.03297 5.16868 5.27640 5.50898 5.76570 5.78476 5.80440 5.97816 6.15767 6.34650 6.38681 6.56354 6.88429 6.96034 7.23806 7.47766 7.59619 7.81632 8.09165 8.63457 8.92239 9.37624 9.62016 10.04254 11.09919 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.009188 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.465922 B = 3046.818177 C = 3682.517139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.912 3.088 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.081 0.919 9 N -0.564 5.564 10 C 0.189 3.811 11 C 0.477 3.523 12 O -0.518 6.518 13 O -0.543 6.543 14 C 0.137 3.863 15 C 0.108 3.892 16 H 0.088 0.912 17 C -0.127 4.127 18 C -0.156 4.156 19 C 0.513 3.487 20 O -0.554 6.554 21 N -0.708 5.708 22 H 0.259 0.741 23 H 0.052 0.948 24 H 0.113 0.887 25 H 0.381 0.619 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -7.977 1.919 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.099 0.901 9 N -0.284 5.284 10 C 0.059 3.941 11 C 0.317 3.683 12 O -0.405 6.405 13 O -0.353 6.353 14 C 0.009 3.991 15 C 0.000 4.000 16 H 0.106 0.894 17 C -0.166 4.166 18 C -0.196 4.196 19 C 0.299 3.701 20 O -0.433 6.433 21 N -0.361 5.361 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.236 0.764 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.530 -8.049 2.296 9.518 hybrid contribution -0.348 1.401 -0.601 1.564 sum 4.182 -6.648 1.695 8.035 Atomic orbital electron populations 1.69856 1.05354 1.26150 1.53364 1.24884 0.95233 0.98686 1.00791 0.86216 0.78779 0.82779 0.78088 1.21694 1.20903 1.20920 1.19241 0.95033 0.84704 1.40100 0.90095 1.43907 1.22809 1.01364 1.60303 1.20328 0.81223 1.02309 0.90215 1.25323 0.83036 0.69820 0.90097 1.90500 1.85688 1.45991 1.18272 1.84643 1.17891 1.86408 1.46385 1.21233 0.95034 0.88058 0.94748 1.22550 0.96636 0.96165 0.84645 0.89351 1.22604 0.98671 0.94224 1.01101 1.22303 1.00977 0.98518 0.97782 1.20889 0.78026 0.84832 0.86320 1.90712 1.43482 1.82235 1.26860 1.46283 1.59492 1.08352 1.22006 0.93091 0.92999 0.86908 0.76376 0.93963 0.91645 0.89297 0.90452 0.88753 0.88184 0.74864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 9.27 55.49 0.51 -24.39 16 2 C 0.00 0.07 4.88 -17.43 -0.09 -0.02 16 3 Si 0.91 20.68 29.60 -169.99 -5.03 15.64 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.51 9.67 -15.06 -0.15 -6.66 16 8 H 0.08 1.93 7.92 -52.49 -0.42 1.51 16 9 N -0.56 -12.64 1.91 -174.61 -0.33 -12.97 16 10 C 0.19 4.27 5.10 -5.19 -0.03 4.24 16 11 C 0.48 11.48 6.54 36.01 0.24 11.72 16 12 O -0.52 -14.06 16.91 -18.75 -0.32 -14.38 16 13 O -0.54 -11.29 13.42 -39.26 -0.53 -11.82 16 14 C 0.14 2.48 5.29 -4.05 -0.02 2.46 16 15 C 0.11 1.54 3.82 -67.02 -0.26 1.29 16 16 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.13 -1.37 6.70 -25.10 -0.17 -1.54 16 18 C -0.16 -1.86 6.86 -26.74 -0.18 -2.05 16 19 C 0.51 8.29 8.43 -10.86 -0.09 8.20 16 20 O -0.55 -11.05 18.03 5.56 0.10 -10.95 16 21 N -0.71 -10.99 4.37 -52.77 -0.23 -11.22 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 24 H 0.11 2.77 6.33 -51.93 -0.33 2.45 16 25 H 0.38 6.30 9.10 45.56 0.41 6.72 16 26 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 28 H 0.09 0.84 7.89 -51.93 -0.41 0.43 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.41 6.65 8.50 -40.82 -0.35 6.30 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -32.66 275.50 -5.51 -38.17 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.09 Total: 10.11 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -0.74 Total: 17.65 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.05 Total: -48.58 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.74 Total: -37.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.66 -5.51 -38.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.821 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds