Wall clock time and date at job start Mon Mar 30 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47093 * 2 1 4 4 C 1.50706 * 109.46729 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99858 * 239.99850 * 4 2 1 6 6 C 1.37877 * 119.99904 * 60.00370 * 4 2 1 7 7 N 1.31515 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47421 * 119.99621 * 8 6 4 11 11 H 1.48499 * 109.46804 * 239.99874 * 8 6 4 12 12 O 1.45199 * 109.47110 * 120.00079 * 2 1 3 13 13 C 1.34223 * 116.99979 * 269.99724 * 12 2 1 14 14 O 1.20827 * 120.00276 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00028 * 180.02562 * 13 12 2 16 16 H 1.09001 * 112.84501 * 73.03237 * 15 13 12 17 17 C 1.53779 * 113.61133 * 301.72709 * 15 13 12 18 18 C 1.53784 * 87.08028 * 220.01620 * 17 15 13 19 19 C 1.53781 * 113.61429 * 204.22981 * 15 13 12 20 20 H 1.09002 * 113.61191 * 254.52803 * 19 15 13 21 21 C 1.50700 * 113.61541 * 25.34682 * 19 15 13 22 22 O 1.20822 * 119.99664 * 79.83590 * 21 19 15 23 23 O 1.34231 * 120.00006 * 259.84309 * 21 19 15 24 24 H 1.09006 * 109.46815 * 300.00412 * 1 2 3 25 25 H 1.08999 * 109.47442 * 59.99428 * 1 2 3 26 26 H 1.08989 * 109.47645 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00356 * 180.02562 * 7 6 4 28 28 H 1.08992 * 113.61920 * 334.56753 * 17 15 13 29 29 H 1.09008 * 113.60864 * 105.47285 * 17 15 13 30 30 H 1.09002 * 113.61551 * 270.88699 * 18 17 15 31 31 H 1.08995 * 113.61284 * 139.98330 * 18 17 15 32 32 H 0.96696 * 116.99878 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1204 -4.0081 9 1 3.1461 -2.2871 -3.6039 10 1 1.1658 -1.5866 -4.8161 11 1 3.1464 -0.1874 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9983 1.2519 2.2503 15 6 2.7194 -0.5771 3.5491 16 1 3.7713 -0.8574 3.4937 17 6 1.8079 -1.6983 4.0753 18 6 2.0825 -1.1520 5.4863 19 6 2.3569 0.2072 4.8213 20 1 3.1988 0.7447 5.2575 21 6 1.1283 1.0669 4.6710 22 8 0.0299 0.5702 4.7522 23 8 1.2543 2.3843 4.4467 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 0.7081 1.1609 -3.4844 28 1 0.7684 -1.5987 3.7631 29 1 2.2067 -2.6992 3.9094 30 1 2.9600 -1.5907 5.9613 31 1 1.2052 -1.1524 6.1331 32 1 0.4378 2.8945 4.3577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:27 Heat of formation + Delta-G solvation = -162.115454 kcal Electronic energy + Delta-G solvation = -18041.044626 eV Core-core repulsion = 14967.523096 eV Total energy + Delta-G solvation = -3073.521530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07154 -39.22479 -37.64347 -35.78751 -35.47673 -33.25787 -29.70979 -27.22155 -26.98041 -25.31729 -22.55446 -21.97026 -20.05003 -19.14731 -17.92736 -17.29847 -16.68312 -15.96769 -15.91461 -15.15030 -14.90550 -14.59621 -14.37082 -13.44186 -12.78516 -12.73220 -12.38373 -12.12059 -11.94489 -11.48712 -11.22464 -11.17422 -11.08499 -10.94272 -10.79212 -10.60831 -10.36589 -10.28839 -10.23147 -9.57664 -9.49684 -8.90662 -8.50637 -6.19407 -4.26437 2.33418 2.89897 3.15638 3.22986 3.29687 3.34617 3.62874 4.28533 4.32747 4.39204 4.66758 4.95277 5.13753 5.34867 5.45358 5.53808 5.62864 5.80797 5.83104 5.97277 6.27985 6.63487 6.76392 6.89458 6.91052 7.15477 7.58763 7.71855 7.91701 8.12876 8.14463 8.60077 8.86645 9.39118 10.88177 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.040304 B = 0.006282 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.546147 B = 4455.858403 C = 4776.992693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.350 6.350 13 C 0.452 3.548 14 O -0.510 6.510 15 C -0.093 4.093 16 H 0.138 0.862 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.097 4.097 20 H 0.115 0.885 21 C 0.508 3.492 22 O -0.521 6.521 23 O -0.494 6.494 24 H 0.014 0.986 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -2.271 14.182 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.266 6.266 13 C 0.294 3.706 14 O -0.400 6.400 15 C -0.112 4.112 16 H 0.156 0.844 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.116 4.116 20 H 0.133 0.867 21 C 0.350 3.650 22 O -0.411 6.411 23 O -0.304 6.304 24 H 0.033 0.967 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.955 -2.165 14.023 14.493 hybrid contribution -0.270 0.214 -1.057 1.111 sum 2.685 -1.951 12.966 13.384 Atomic orbital electron populations 1.22145 0.97539 1.00129 1.01304 1.20657 0.91402 0.93894 0.77799 0.93601 1.21072 1.32450 1.13468 0.88873 0.91219 1.24899 0.94921 0.95096 0.99105 1.69910 1.36097 1.22634 1.24091 0.86214 0.78640 0.79492 0.81767 1.19450 1.20683 1.20733 1.86485 1.75409 1.43507 1.21178 1.23132 0.75259 0.86008 0.86153 1.90658 1.48662 1.16397 1.84295 1.22466 1.03061 0.97236 0.88465 0.84411 1.22958 1.00779 0.97999 0.94325 1.22862 1.03139 0.92312 0.97434 1.21987 0.95903 0.95276 0.98449 0.86724 1.22362 0.90090 0.81330 0.71179 1.90685 1.28536 1.74255 1.47606 1.84511 1.42106 1.21039 1.82753 0.96686 0.88244 0.94424 0.92437 0.88574 0.89551 0.88224 0.89666 0.73529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.33 37.16 0.35 -3.68 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 O -0.35 -8.45 9.86 -39.24 -0.39 -8.84 16 13 C 0.45 9.49 6.88 36.01 0.25 9.74 16 14 O -0.51 -11.90 13.09 -25.63 -0.34 -12.24 16 15 C -0.09 -1.36 4.21 -90.96 -0.38 -1.74 16 16 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 17 C -0.12 -1.60 7.23 -25.92 -0.19 -1.79 16 18 C -0.12 -1.23 7.43 -25.92 -0.19 -1.42 16 19 C -0.10 -1.24 4.27 -90.96 -0.39 -1.63 16 20 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.51 8.16 5.65 36.01 0.20 8.36 16 22 O -0.52 -9.56 16.05 -18.75 -0.30 -9.86 16 23 O -0.49 -7.48 12.19 -46.14 -0.56 -8.04 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 26 H 0.04 0.94 8.14 -51.94 -0.42 0.52 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 1.52 7.43 -51.93 -0.39 1.14 16 29 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.90 7.74 -51.93 -0.40 0.50 16 32 H 0.41 4.65 9.10 45.56 0.41 5.06 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -33.81 277.59 -5.76 -39.57 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.14 Total: 3.82 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.83 Total: 0.17 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.59 Total: -38.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.81 -5.76 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.542 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds