Wall clock time and date at job start Mon Mar 30 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47093 * 2 1 4 4 C 1.50706 * 109.46729 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99858 * 239.99850 * 4 2 1 6 6 C 1.37877 * 119.99904 * 60.00370 * 4 2 1 7 7 N 1.31515 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47421 * 119.99621 * 8 6 4 11 11 H 1.48499 * 109.46804 * 239.99874 * 8 6 4 12 12 O 1.45199 * 109.47110 * 120.00079 * 2 1 3 13 13 C 1.34223 * 116.99979 * 269.99724 * 12 2 1 14 14 O 1.20827 * 120.00276 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00028 * 180.02562 * 13 12 2 16 16 H 1.09001 * 112.84501 * 73.03237 * 15 13 12 17 17 C 1.53779 * 113.61133 * 301.72709 * 15 13 12 18 18 C 1.53784 * 87.08028 * 220.01620 * 17 15 13 19 19 C 1.53781 * 113.61429 * 204.22981 * 15 13 12 20 20 H 1.09002 * 113.61191 * 254.52803 * 19 15 13 21 21 C 1.50700 * 113.61541 * 25.34682 * 19 15 13 22 22 O 1.20822 * 119.99664 * 79.83590 * 21 19 15 23 23 O 1.34231 * 120.00006 * 259.84309 * 21 19 15 24 24 H 1.09006 * 109.46815 * 300.00412 * 1 2 3 25 25 H 1.08999 * 109.47442 * 59.99428 * 1 2 3 26 26 H 1.08989 * 109.47645 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00356 * 180.02562 * 7 6 4 28 28 H 1.08992 * 113.61920 * 334.56753 * 17 15 13 29 29 H 1.09008 * 113.60864 * 105.47285 * 17 15 13 30 30 H 1.09002 * 113.61551 * 270.88699 * 18 17 15 31 31 H 1.08995 * 113.61284 * 139.98330 * 18 17 15 32 32 H 0.96696 * 116.99878 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1204 -4.0081 9 1 3.1461 -2.2871 -3.6039 10 1 1.1658 -1.5866 -4.8161 11 1 3.1464 -0.1874 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9983 1.2519 2.2503 15 6 2.7194 -0.5771 3.5491 16 1 3.7713 -0.8574 3.4937 17 6 1.8079 -1.6983 4.0753 18 6 2.0825 -1.1520 5.4863 19 6 2.3569 0.2072 4.8213 20 1 3.1988 0.7447 5.2575 21 6 1.1283 1.0669 4.6710 22 8 0.0299 0.5702 4.7522 23 8 1.2543 2.3843 4.4467 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 0.7081 1.1609 -3.4844 28 1 0.7684 -1.5987 3.7631 29 1 2.2067 -2.6992 3.9094 30 1 2.9600 -1.5907 5.9613 31 1 1.2052 -1.1524 6.1331 32 1 0.4378 2.8945 4.3577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603119019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:27 Heat of formation + Delta-G solvation = -184.694231 kcal Electronic energy + Delta-G solvation = -18042.023716 eV Core-core repulsion = 14967.523096 eV Total energy + Delta-G solvation = -3074.500620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.35196 -40.82756 -38.87632 -37.50434 -36.87197 -35.35529 -31.80898 -28.40890 -28.11011 -27.49399 -23.83064 -23.61227 -21.75912 -20.36732 -19.30879 -18.84567 -18.57972 -17.67542 -17.28354 -16.73970 -16.42251 -16.16347 -15.71842 -15.04280 -14.41505 -14.07214 -13.93167 -13.86148 -13.27219 -13.17794 -13.05668 -12.85517 -12.63695 -12.44603 -12.33850 -12.15729 -12.07434 -11.64079 -11.53865 -11.37910 -11.13386 -11.01424 -10.63822 -8.31895 -6.49379 1.09135 1.28913 1.40728 1.41936 1.55818 1.89835 2.21733 2.41399 2.98944 3.21959 3.37702 3.69141 3.87161 4.13285 4.35388 4.46206 4.48768 4.66818 4.69377 4.76834 4.80462 4.96740 5.05528 5.10266 5.34570 5.44390 5.56584 5.62102 5.87016 6.04984 6.56362 6.90845 6.97467 7.22969 8.76451 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.040304 B = 0.006282 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.546147 B = 4455.858403 C = 4776.992693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.219 3.781 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.986 3.014 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.275 1.275 12 O -0.359 6.359 13 C 0.438 3.562 14 O -0.541 6.541 15 C -0.091 4.091 16 H 0.181 0.819 17 C -0.129 4.129 18 C -0.095 4.095 19 C -0.101 4.101 20 H 0.149 0.851 21 C 0.496 3.504 22 O -0.554 6.554 23 O -0.502 6.502 24 H 0.013 0.987 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -3.876 14.987 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.809 3.191 9 H -0.184 1.184 10 H -0.197 1.197 11 H -0.200 1.200 12 O -0.275 6.275 13 C 0.283 3.717 14 O -0.432 6.432 15 C -0.109 4.109 16 H 0.198 0.802 17 C -0.166 4.166 18 C -0.131 4.131 19 C -0.120 4.120 20 H 0.167 0.833 21 C 0.340 3.660 22 O -0.446 6.446 23 O -0.313 6.313 24 H 0.032 0.968 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.694 -3.757 14.857 16.027 hybrid contribution -0.849 0.808 -1.259 1.720 sum 3.845 -2.949 13.598 14.436 Atomic orbital electron populations 1.21961 0.97293 1.00118 1.00319 1.20307 0.91582 0.92114 0.79453 0.97523 1.21347 1.33419 1.13954 0.89841 0.91157 1.25893 0.94643 0.95648 1.02327 1.70028 1.36654 1.23825 1.25248 0.85089 0.78356 0.78461 0.77230 1.18447 1.19723 1.19989 1.86476 1.75887 1.43715 1.21432 1.24584 0.74239 0.85971 0.86898 1.90635 1.49840 1.17939 1.84794 1.22893 1.05286 0.97892 0.84849 0.80155 1.22994 0.98385 0.98989 0.96279 1.22925 1.04965 0.89684 0.95568 1.22280 0.95418 0.96373 0.97940 0.83328 1.23221 0.90996 0.81581 0.70175 1.90665 1.30120 1.74713 1.49116 1.84501 1.43099 1.21260 1.82393 0.96800 0.89969 0.93771 0.91952 0.92411 0.86917 0.83346 0.90105 0.72328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.38 2.56 29.85 0.08 12.45 16 3 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 4 C -0.55 -31.60 8.90 25.60 0.23 -31.37 16 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.47 16 8 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 O -0.36 -17.64 9.86 -51.35 -0.51 -18.15 16 13 C 0.44 18.49 6.88 71.24 0.49 18.98 16 14 O -0.54 -25.90 13.09 28.54 0.37 -25.52 16 15 C -0.09 -2.42 4.21 -11.01 -0.05 -2.46 16 16 H 0.18 3.29 8.14 -2.39 -0.02 3.27 16 17 C -0.13 -3.05 7.23 31.12 0.22 -2.82 16 18 C -0.09 -1.56 7.43 31.12 0.23 -1.33 16 19 C -0.10 -2.32 4.27 -11.01 -0.05 -2.36 16 20 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 21 C 0.50 15.75 5.65 71.24 0.40 16.15 16 22 O -0.55 -20.67 16.05 21.98 0.35 -20.31 16 23 O -0.50 -15.27 12.19 -44.84 -0.55 -15.82 16 24 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.08 4.74 6.07 -2.39 -0.01 4.73 16 26 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.06 1.83 7.43 -2.39 -0.02 1.81 16 29 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.48 7.74 -2.39 -0.02 1.46 16 32 H 0.42 9.94 9.10 -74.06 -0.67 9.27 16 Total: -1.00 -76.33 277.59 5.09 -71.24 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.47 Total: 15.35 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 2.68 Total: 1.58 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.24 Total: -53.47 kcal Atomic # 8 Polarization: -79.47 SS G_CDS: -0.33 Total: -79.80 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.33 5.09 -71.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.451 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds