Wall clock time and date at job start Mon Mar 30 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.50693 * 109.47257 * 240.00161 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99571 * 4 2 1 6 6 C 1.37886 * 120.00075 * 59.99963 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47066 * 60.00093 * 8 6 4 10 10 H 1.48499 * 109.47137 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47333 * 300.00185 * 8 6 4 12 12 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 13 13 O 1.20833 * 119.99747 * 120.00770 * 12 2 1 14 14 O 1.34230 * 120.00262 * 299.72392 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 C 1.52994 * 109.46919 * 180.02562 * 15 14 12 17 17 C 1.50701 * 115.55196 * 34.42250 * 16 15 14 18 18 O 1.20825 * 120.00364 * 145.58321 * 17 16 15 19 19 O 1.34227 * 119.99564 * 325.57891 * 17 16 15 20 20 C 1.53002 * 117.50012 * 248.75036 * 16 15 14 21 21 C 1.53005 * 117.50243 * 180.09238 * 16 15 14 22 22 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 23 23 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 24 24 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 25 25 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47630 * 300.00638 * 15 14 12 27 27 H 1.09004 * 109.46770 * 60.01042 * 15 14 12 28 28 H 0.96711 * 116.99924 * 179.97438 * 19 17 16 29 29 H 1.08999 * 117.50286 * 0.02562 * 20 16 15 30 30 H 1.09008 * 117.49861 * 145.02471 * 20 16 15 31 31 H 1.08996 * 117.50118 * 214.98295 * 21 16 15 32 32 H 1.09004 * 117.49482 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8270 -0.4198 -5.2205 11 1 3.8076 -1.1188 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7126 -0.2486 2.4496 15 6 2.2364 -0.9795 3.5896 16 6 1.7691 -0.3096 4.8833 17 6 0.3931 0.3032 4.8377 18 8 -0.3081 0.2878 5.8216 19 8 -0.0535 0.8662 3.7040 20 6 2.8269 0.3920 5.7376 21 6 2.2210 -0.9336 6.2052 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.7096 1.1619 -3.4844 26 1 1.8730 -2.0067 3.5609 27 1 3.3258 -0.9783 3.5525 28 1 -0.9427 1.2460 3.7231 29 1 3.8557 0.3767 5.3778 30 1 2.5274 1.2966 6.2670 31 1 1.5232 -0.9007 7.0419 32 1 2.8509 -1.8217 6.1532 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:29 Heat of formation + Delta-G solvation = -157.012109 kcal Electronic energy + Delta-G solvation = -17663.571423 eV Core-core repulsion = 14590.271190 eV Total energy + Delta-G solvation = -3073.300233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53425 -39.40819 -37.37242 -35.96172 -35.24133 -33.85425 -30.63000 -27.92413 -25.17520 -24.59081 -22.95185 -22.70945 -19.93181 -19.70735 -17.90841 -17.08180 -16.36042 -16.04402 -15.93124 -15.28859 -15.15854 -14.58114 -14.04717 -13.78177 -13.13115 -12.75284 -12.43219 -11.90998 -11.75098 -11.53874 -11.35701 -11.06701 -11.01389 -10.80489 -10.68451 -10.64846 -10.47096 -10.28764 -10.04395 -9.86728 -9.08700 -9.02474 -8.42950 -6.09054 -4.14366 2.10425 3.00209 3.24926 3.32194 3.34585 3.35955 3.42127 3.63657 4.38747 4.47505 4.56764 4.66585 5.05822 5.24168 5.33151 5.42844 5.54515 5.58187 5.71692 5.81963 6.18417 6.60157 6.71267 6.92443 6.93690 7.24635 7.47589 7.76691 7.96567 8.05305 8.16841 8.87326 8.95644 9.50916 10.98196 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.044144 B = 0.005709 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.138089 B = 4903.609017 C = 5339.780245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.074 0.926 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.465 3.535 13 O -0.522 6.522 14 O -0.343 6.343 15 C 0.101 3.899 16 C -0.144 4.144 17 C 0.524 3.476 18 O -0.530 6.530 19 O -0.475 6.475 20 C -0.141 4.141 21 C -0.134 4.134 22 H 0.028 0.972 23 H 0.094 0.906 24 H 0.028 0.972 25 H 0.263 0.737 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.405 0.595 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 0.469 14.068 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.410 6.410 14 O -0.260 6.260 15 C 0.026 3.974 16 C -0.145 4.145 17 C 0.367 3.633 18 O -0.421 6.421 19 O -0.283 6.283 20 C -0.178 4.178 21 C -0.171 4.171 22 H 0.047 0.953 23 H 0.112 0.888 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.263 0.737 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.919 0.114 14.150 14.181 hybrid contribution -0.227 -0.322 -0.797 0.889 sum 0.692 -0.208 13.353 13.373 Atomic orbital electron populations 1.21712 0.95580 0.99878 1.01799 1.18716 0.94914 0.96880 0.85364 0.91852 1.21112 1.31917 1.13232 0.88888 0.90776 1.24931 0.94926 0.95023 0.99082 1.69873 1.36525 1.22771 1.23897 0.86444 0.79272 0.79669 0.81391 1.20131 1.21234 1.20115 1.25400 0.76431 0.83138 0.84064 1.90497 1.36640 1.26968 1.86890 1.86773 1.69725 1.54880 1.14626 1.22180 0.98624 0.94711 0.81916 1.20968 0.92175 1.06863 0.94482 1.21830 0.87188 0.74169 0.80099 1.90683 1.57766 1.56794 1.36820 1.84792 1.37952 1.68416 1.37160 1.23258 0.97301 0.97092 1.00174 1.23199 1.02405 0.97533 0.93961 0.95319 0.88786 0.95271 0.92683 0.90980 0.90612 0.73709 0.86830 0.87699 0.86714 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.90 37.16 0.33 -2.76 16 2 C 0.06 1.52 2.74 -92.93 -0.25 1.27 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.39 8.37 -34.44 -0.29 -14.67 16 5 H 0.07 2.16 6.76 -52.49 -0.35 1.81 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.46 10.81 7.25 36.00 0.26 11.07 16 13 O -0.52 -13.17 15.21 -18.76 -0.29 -13.46 16 14 O -0.34 -6.66 7.76 -46.81 -0.36 -7.02 16 15 C 0.10 1.55 5.58 37.15 0.21 1.76 16 16 C -0.14 -1.85 2.54 -155.66 -0.40 -2.25 16 17 C 0.52 7.59 7.85 36.01 0.28 7.87 16 18 O -0.53 -8.43 17.02 -18.75 -0.32 -8.75 16 19 O -0.47 -6.71 11.15 -46.81 -0.52 -7.23 16 20 C -0.14 -1.38 9.88 -26.69 -0.26 -1.65 16 21 C -0.13 -1.29 9.77 -26.69 -0.26 -1.55 16 22 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 24 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 27 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 28 H 0.41 3.87 9.10 45.56 0.41 4.29 16 29 H 0.11 0.96 8.05 -51.93 -0.42 0.54 16 30 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.11 1.11 7.67 -51.93 -0.40 0.72 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -32.36 284.19 -5.23 -37.59 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.15 Total: 1.58 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.48 Total: 0.69 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.63 Total: -24.10 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.49 Total: -36.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.36 -5.23 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.423 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds