Wall clock time and date at job start Mon Mar 30 2020 18:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.50693 * 109.47257 * 240.00161 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99571 * 4 2 1 6 6 C 1.37886 * 120.00075 * 59.99963 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47066 * 60.00093 * 8 6 4 10 10 H 1.48499 * 109.47137 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47333 * 300.00185 * 8 6 4 12 12 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 13 13 O 1.20833 * 119.99747 * 120.00770 * 12 2 1 14 14 O 1.34230 * 120.00262 * 299.72392 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 C 1.52994 * 109.46919 * 180.02562 * 15 14 12 17 17 C 1.50701 * 115.55196 * 34.42250 * 16 15 14 18 18 O 1.20825 * 120.00364 * 145.58321 * 17 16 15 19 19 O 1.34227 * 119.99564 * 325.57891 * 17 16 15 20 20 C 1.53002 * 117.50012 * 248.75036 * 16 15 14 21 21 C 1.53005 * 117.50243 * 180.09238 * 16 15 14 22 22 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 23 23 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 24 24 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 25 25 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47630 * 300.00638 * 15 14 12 27 27 H 1.09004 * 109.46770 * 60.01042 * 15 14 12 28 28 H 0.96711 * 116.99924 * 179.97438 * 19 17 16 29 29 H 1.08999 * 117.50286 * 0.02562 * 20 16 15 30 30 H 1.09008 * 117.49861 * 145.02471 * 20 16 15 31 31 H 1.08996 * 117.50118 * 214.98295 * 21 16 15 32 32 H 1.09004 * 117.49482 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8270 -0.4198 -5.2205 11 1 3.8076 -1.1188 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7126 -0.2486 2.4496 15 6 2.2364 -0.9795 3.5896 16 6 1.7691 -0.3096 4.8833 17 6 0.3931 0.3032 4.8377 18 8 -0.3081 0.2878 5.8216 19 8 -0.0535 0.8662 3.7040 20 6 2.8269 0.3920 5.7376 21 6 2.2210 -0.9336 6.2052 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.7096 1.1619 -3.4844 26 1 1.8730 -2.0067 3.5609 27 1 3.3258 -0.9783 3.5525 28 1 -0.9427 1.2460 3.7231 29 1 3.8557 0.3767 5.3778 30 1 2.5274 1.2966 6.2670 31 1 1.5232 -0.9007 7.0419 32 1 2.8509 -1.8217 6.1532 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:28 Heat of formation + Delta-G solvation = -177.111264 kcal Electronic energy + Delta-G solvation = -17664.442987 eV Core-core repulsion = 14590.271190 eV Total energy + Delta-G solvation = -3074.171798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70506 -41.03574 -38.43918 -37.29920 -36.62398 -35.87668 -32.64364 -29.14612 -27.23600 -25.75198 -24.68858 -23.53996 -21.53655 -20.94263 -19.07349 -18.64301 -18.04362 -17.78332 -17.40878 -16.83859 -16.55656 -15.97679 -15.31819 -14.98556 -14.68776 -14.52921 -13.92115 -13.48942 -13.09942 -12.92776 -12.74545 -12.58183 -12.54026 -12.48112 -12.26703 -12.04125 -11.93207 -11.90456 -11.60514 -11.10853 -11.06378 -10.93213 -10.50146 -8.17517 -6.30552 1.04601 1.43807 1.45229 1.50661 1.53361 1.84914 2.06906 2.44887 2.68393 3.12493 3.44737 3.57489 3.75756 4.10528 4.25367 4.38311 4.46871 4.64636 4.73979 4.78373 4.87487 4.96801 5.09418 5.10805 5.41940 5.50925 5.62096 5.72671 5.93041 6.14706 6.75628 7.04117 7.12373 7.38049 8.88512 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.044144 B = 0.005709 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.138089 B = 4903.609017 C = 5339.780245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 H 0.050 0.950 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.547 6.547 14 O -0.338 6.338 15 C 0.097 3.903 16 C -0.173 4.173 17 C 0.523 3.477 18 O -0.550 6.550 19 O -0.489 6.489 20 C -0.126 4.126 21 C -0.114 4.114 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.268 0.732 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.421 0.579 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 0.320 14.873 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.033 3.967 3 H 0.068 0.932 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.318 3.682 13 O -0.438 6.438 14 O -0.254 6.254 15 C 0.023 3.977 16 C -0.174 4.174 17 C 0.367 3.633 18 O -0.442 6.442 19 O -0.300 6.300 20 C -0.163 4.163 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.281 0.719 29 H 0.149 0.851 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.415 -0.010 14.974 15.041 hybrid contribution -0.406 -0.234 -0.955 1.063 sum 1.010 -0.243 14.020 14.058 Atomic orbital electron populations 1.21530 0.94368 0.99560 1.02102 1.18622 0.95937 0.96025 0.86086 0.93242 1.21256 1.32612 1.13283 0.90638 0.92619 1.25628 0.94929 0.95659 1.01519 1.69957 1.36666 1.23358 1.24717 0.85547 0.78739 0.78639 0.78344 1.19994 1.19957 1.19893 1.24825 0.75908 0.82452 0.84967 1.90476 1.37748 1.27974 1.87563 1.86714 1.69371 1.54931 1.14397 1.22488 0.99376 0.94618 0.81201 1.21032 0.92351 1.09554 0.94447 1.22137 0.87621 0.73772 0.79759 1.90669 1.58385 1.57793 1.37362 1.84759 1.39422 1.68499 1.37338 1.23448 0.97092 0.97529 0.98246 1.23363 1.01788 0.98437 0.91441 0.92663 0.90690 0.95765 0.92320 0.91162 0.89402 0.71860 0.85119 0.87006 0.86635 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.90 71.98 0.64 -4.88 16 2 C 0.05 2.67 2.74 -12.29 -0.03 2.64 16 3 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.54 -30.64 8.37 25.60 0.21 -30.43 16 5 H 0.06 3.31 6.76 -2.91 -0.02 3.29 16 6 C 0.02 1.24 5.30 84.66 0.45 1.69 16 7 N -0.91 -50.33 11.32 21.45 0.24 -50.08 16 8 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.47 21.99 7.25 71.23 0.52 22.50 16 13 O -0.55 -27.71 15.21 21.94 0.33 -27.38 16 14 O -0.34 -12.86 7.76 -44.18 -0.34 -13.20 16 15 C 0.10 2.86 5.58 71.98 0.40 3.26 16 16 C -0.17 -4.10 2.54 -52.93 -0.13 -4.24 16 17 C 0.52 14.49 7.85 71.24 0.56 15.05 16 18 O -0.55 -16.86 17.02 21.97 0.37 -16.49 16 19 O -0.49 -13.34 11.15 -44.16 -0.49 -13.84 16 20 C -0.13 -2.10 9.88 30.62 0.30 -1.80 16 21 C -0.11 -1.85 9.77 30.62 0.30 -1.55 16 22 H 0.05 2.22 8.12 -2.39 -0.02 2.21 16 23 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 24 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 27 H 0.09 2.37 7.89 -2.38 -0.02 2.35 16 28 H 0.42 7.70 9.10 -74.05 -0.67 7.02 16 29 H 0.13 1.74 8.05 -2.39 -0.02 1.72 16 30 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.12 1.93 7.67 -2.39 -0.02 1.91 16 32 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -68.62 284.19 5.83 -62.79 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.47 Total: 10.20 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 3.22 Total: 2.25 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.24 Total: -50.08 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.13 Total: -70.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.62 5.83 -62.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.321 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds