Wall clock time and date at job start Mon Mar 30 2020 18:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47316 * 240.00318 * 3 2 1 5 5 H 1.48498 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46959 * 120.00100 * 3 2 1 7 7 C 1.37879 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47179 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00015 * 359.97438 * 11 10 9 13 13 O 1.34222 * 119.99881 * 180.02562 * 11 10 9 14 14 C 1.45203 * 117.00126 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46910 * 29.99977 * 14 13 11 16 16 C 1.50696 * 109.47567 * 269.99968 * 14 13 11 17 17 O 1.20832 * 119.99653 * 354.99744 * 16 14 13 18 18 O 1.34230 * 120.00677 * 174.99295 * 16 14 13 19 19 C 1.53003 * 109.47391 * 149.99574 * 14 13 11 20 20 C 1.53000 * 117.49792 * 180.02562 * 19 14 13 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 14 22 22 H 0.97005 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47488 * 59.99929 * 9 7 2 24 24 H 1.09000 * 109.46806 * 300.00064 * 9 7 2 25 25 H 1.09002 * 109.47096 * 59.99618 * 10 9 7 26 26 H 1.09005 * 109.46700 * 299.99999 * 10 9 7 27 27 H 0.96692 * 117.00476 * 179.97438 * 18 16 14 28 28 H 1.08999 * 115.54778 * 34.33528 * 19 14 13 29 29 H 1.09002 * 117.49833 * 214.98161 * 20 19 14 30 30 H 1.09002 * 117.49953 * 359.97438 * 20 19 14 31 31 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 32 32 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9672 -0.0033 12 8 0.2835 -4.9672 -0.0041 13 8 2.1628 -6.1296 -0.0028 14 6 1.3720 -7.3474 -0.0041 15 1 0.4283 -7.1672 -0.5189 16 6 1.0968 -7.7692 1.4162 17 8 1.5979 -7.1638 2.3341 18 8 0.2950 -8.8173 1.6618 19 6 2.1427 -8.4553 -0.7249 20 6 1.4726 -9.8265 -0.8334 21 6 1.5956 -8.9358 -2.0713 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5564 -0.8920 24 1 0.6240 -2.5574 0.8880 25 1 2.8712 -3.6048 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 0.1486 -9.0503 2.5888 28 1 3.2253 -8.4324 -0.6003 29 1 2.1144 -10.7059 -0.7803 30 1 0.4828 -9.9394 -0.3908 31 1 2.3183 -9.2293 -2.8327 32 1 0.6869 -8.4625 -2.4431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:42 Heat of formation + Delta-G solvation = -162.589386 kcal Electronic energy + Delta-G solvation = -17191.275607 eV Core-core repulsion = 14117.733526 eV Total energy + Delta-G solvation = -3073.542082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94133 -39.59275 -37.62088 -36.42796 -35.70964 -33.60448 -31.23391 -29.22495 -25.94831 -23.35806 -22.52807 -22.15528 -20.65730 -19.89267 -18.44625 -17.48986 -17.16945 -16.63247 -16.09448 -15.48075 -15.26594 -14.78035 -14.45097 -14.13074 -13.49762 -12.87025 -12.48073 -12.26647 -11.89415 -11.82478 -11.48335 -11.38185 -11.22551 -10.94665 -10.89896 -10.79137 -10.65230 -10.12035 -10.05077 -9.97974 -9.58935 -9.19722 -8.37162 -6.01144 -4.06157 2.03692 2.35165 2.71657 3.02405 3.33877 3.38275 3.40448 3.68517 4.28993 4.44843 4.56317 4.62745 4.80919 5.07716 5.11182 5.34319 5.41200 5.46065 5.61787 5.83913 5.88916 6.10335 6.17278 6.32274 6.50279 6.82882 7.65462 7.72201 7.72492 7.97555 8.15430 8.35303 9.00362 9.57846 11.09902 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.043718 B = 0.004596 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.308498 B = 6090.915256 C = 6317.789525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.460 3.540 12 O -0.502 6.502 13 O -0.332 6.332 14 C 0.128 3.872 15 H 0.121 0.879 16 C 0.470 3.530 17 O -0.496 6.496 18 O -0.510 6.510 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.166 4.166 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.411 0.589 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -19.859 -1.665 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.304 3.696 12 O -0.388 6.388 13 O -0.250 6.250 14 C 0.071 3.929 15 H 0.138 0.862 16 C 0.311 3.689 17 O -0.382 6.382 18 O -0.323 6.323 19 C -0.177 4.177 20 C -0.199 4.199 21 C -0.203 4.203 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.270 0.730 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.929 -19.473 -1.813 19.776 hybrid contribution 0.211 0.769 0.750 1.095 sum 3.140 -18.705 -1.063 18.996 Atomic orbital electron populations 1.69986 1.06116 1.26891 1.49831 1.25015 0.94858 0.99335 0.95060 0.86585 0.79499 0.82815 0.78663 1.20134 1.21253 1.20142 1.21107 0.93074 0.90563 1.51980 0.92276 1.19037 0.93218 0.89213 0.98942 1.21819 1.00772 0.86902 1.04328 1.25052 0.88155 0.85600 0.70827 1.90635 1.15805 1.87190 1.45192 1.86772 1.40389 1.13579 1.84230 1.21395 0.97630 0.84486 0.89410 0.86155 1.23645 0.75245 0.77357 0.92688 1.90770 1.48143 1.52830 1.46418 1.84493 1.63626 1.47749 1.36414 1.22029 1.00409 0.93910 1.01366 1.23127 1.03028 0.92456 1.01245 1.23164 1.03338 1.02935 0.90852 0.92781 0.95506 0.95555 0.88536 0.88617 0.73016 0.85734 0.87986 0.87182 0.87852 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 11 C 0.46 9.41 7.92 36.00 0.29 9.69 16 12 O -0.50 -11.59 15.20 -18.75 -0.29 -11.87 16 13 O -0.33 -5.77 9.42 -45.88 -0.43 -6.20 16 14 C 0.13 1.82 2.72 -27.88 -0.08 1.75 16 15 H 0.12 1.73 6.91 -51.93 -0.36 1.37 16 16 C 0.47 6.83 7.58 36.00 0.27 7.11 16 17 O -0.50 -9.08 17.27 -25.40 -0.44 -9.52 16 18 O -0.51 -5.14 11.60 -39.26 -0.46 -5.60 16 19 C -0.16 -1.66 5.50 -90.58 -0.50 -2.16 16 20 C -0.16 -1.29 9.55 -26.73 -0.26 -1.54 16 21 C -0.17 -1.40 10.18 -26.69 -0.27 -1.67 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 23 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 24 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 25 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 27 H 0.41 2.41 9.10 45.56 0.41 2.82 16 28 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.11 0.89 6.89 -51.93 -0.36 0.53 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -34.88 289.58 -5.98 -40.86 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.22 Total: -0.17 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.23 Total: -1.98 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.61 Total: -33.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.88 -5.98 -40.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.725 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds