Wall clock time and date at job start Mon Mar 30 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47316 * 240.00318 * 3 2 1 5 5 H 1.48498 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46959 * 120.00100 * 3 2 1 7 7 C 1.37879 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47179 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00015 * 359.97438 * 11 10 9 13 13 O 1.34222 * 119.99881 * 180.02562 * 11 10 9 14 14 C 1.45203 * 117.00126 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46910 * 29.99977 * 14 13 11 16 16 C 1.50696 * 109.47567 * 269.99968 * 14 13 11 17 17 O 1.20832 * 119.99653 * 354.99744 * 16 14 13 18 18 O 1.34230 * 120.00677 * 174.99295 * 16 14 13 19 19 C 1.53003 * 109.47391 * 149.99574 * 14 13 11 20 20 C 1.53000 * 117.49792 * 180.02562 * 19 14 13 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 14 22 22 H 0.97005 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47488 * 59.99929 * 9 7 2 24 24 H 1.09000 * 109.46806 * 300.00064 * 9 7 2 25 25 H 1.09002 * 109.47096 * 59.99618 * 10 9 7 26 26 H 1.09005 * 109.46700 * 299.99999 * 10 9 7 27 27 H 0.96692 * 117.00476 * 179.97438 * 18 16 14 28 28 H 1.08999 * 115.54778 * 34.33528 * 19 14 13 29 29 H 1.09002 * 117.49833 * 214.98161 * 20 19 14 30 30 H 1.09002 * 117.49953 * 359.97438 * 20 19 14 31 31 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 32 32 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9672 -0.0033 12 8 0.2835 -4.9672 -0.0041 13 8 2.1628 -6.1296 -0.0028 14 6 1.3720 -7.3474 -0.0041 15 1 0.4283 -7.1672 -0.5189 16 6 1.0968 -7.7692 1.4162 17 8 1.5979 -7.1638 2.3341 18 8 0.2950 -8.8173 1.6618 19 6 2.1427 -8.4553 -0.7249 20 6 1.4726 -9.8265 -0.8334 21 6 1.5956 -8.9358 -2.0713 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5564 -0.8920 24 1 0.6240 -2.5574 0.8880 25 1 2.8712 -3.6048 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 0.1486 -9.0503 2.5888 28 1 3.2253 -8.4324 -0.6003 29 1 2.1144 -10.7059 -0.7803 30 1 0.4828 -9.9394 -0.3908 31 1 2.3183 -9.2293 -2.8327 32 1 0.6869 -8.4625 -2.4431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:40 Heat of formation + Delta-G solvation = -185.582208 kcal Electronic energy + Delta-G solvation = -17192.272651 eV Core-core repulsion = 14117.733526 eV Total energy + Delta-G solvation = -3074.539125 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24207 -40.96087 -38.59722 -37.62147 -36.94229 -35.68856 -33.22660 -30.43842 -27.92481 -24.73098 -23.70583 -23.17876 -21.68532 -21.54868 -19.61274 -19.12998 -18.46996 -18.17211 -17.52733 -16.85311 -16.69964 -16.49792 -15.73741 -15.08793 -14.90492 -14.52123 -14.26316 -13.86895 -13.29314 -12.90471 -12.84999 -12.76631 -12.62880 -12.52869 -12.31613 -12.03560 -11.93926 -11.84351 -11.67910 -11.40007 -11.23425 -11.04457 -10.57792 -8.20736 -6.34881 0.89803 0.97542 1.26650 1.43991 1.47857 1.55692 1.90792 2.42763 2.87126 3.13105 3.36644 3.65842 3.72902 3.84875 4.05185 4.21661 4.28786 4.39833 4.43496 4.81077 4.82998 4.97718 5.09355 5.18812 5.27090 5.38603 5.44211 5.51380 5.78259 6.10819 6.58082 6.78045 6.82612 7.35423 8.91857 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.043718 B = 0.004596 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.308498 B = 6090.915256 C = 6317.789525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.039 3.961 10 C -0.093 4.093 11 C 0.467 3.533 12 O -0.538 6.538 13 O -0.327 6.327 14 C 0.119 3.881 15 H 0.117 0.883 16 C 0.475 3.525 17 O -0.541 6.541 18 O -0.491 6.491 19 C -0.178 4.178 20 C -0.143 4.143 21 C -0.160 4.160 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.014 1.014 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.432 0.568 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 -20.930 -2.210 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.131 4.131 11 C 0.312 3.688 12 O -0.427 6.427 13 O -0.244 6.244 14 C 0.062 3.938 15 H 0.135 0.865 16 C 0.318 3.682 17 O -0.431 6.431 18 O -0.305 6.305 19 C -0.196 4.196 20 C -0.180 4.180 21 C -0.197 4.197 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.005 0.995 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.295 0.705 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.626 -20.605 -2.358 21.250 hybrid contribution -0.387 0.935 0.926 1.372 sum 4.239 -19.671 -1.432 20.173 Atomic orbital electron populations 1.70155 1.08255 1.28055 1.51075 1.26099 0.95732 1.03866 0.94361 0.85346 0.78047 0.77201 0.79498 1.18503 1.21216 1.18923 1.21599 0.94139 0.91198 1.51473 0.90394 1.18806 0.93626 0.91851 0.95526 1.21573 0.99502 0.85533 1.06443 1.24762 0.87437 0.86523 0.70081 1.90620 1.17213 1.87885 1.46958 1.86704 1.40332 1.13814 1.83548 1.21820 0.97941 0.84024 0.90014 0.86534 1.23695 0.74807 0.77475 0.92261 1.90757 1.50217 1.54564 1.47586 1.84439 1.61885 1.45735 1.38408 1.22057 1.00387 0.94097 1.03055 1.23254 1.02976 0.91704 1.00017 1.23294 1.03392 1.02260 0.90738 0.92699 0.98633 0.99542 0.86993 0.85753 0.70537 0.85222 0.85673 0.87251 0.85929 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.98 44.06 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.17 4.26 29.85 0.13 2.30 16 10 C -0.09 -3.93 5.75 29.85 0.17 -3.76 16 11 C 0.47 19.37 7.92 71.24 0.56 19.93 16 12 O -0.54 -25.72 15.20 21.97 0.33 -25.39 16 13 O -0.33 -11.28 9.42 -44.99 -0.42 -11.71 16 14 C 0.12 3.31 2.72 29.85 0.08 3.39 16 15 H 0.12 3.35 6.91 -2.38 -0.02 3.34 16 16 C 0.48 13.52 7.58 71.23 0.54 14.06 16 17 O -0.54 -19.90 17.27 28.30 0.49 -19.41 16 18 O -0.49 -9.04 11.60 -51.41 -0.60 -9.64 16 19 C -0.18 -3.39 5.50 -10.77 -0.06 -3.45 16 20 C -0.14 -1.86 9.55 30.60 0.29 -1.56 16 21 C -0.16 -2.30 10.18 30.62 0.31 -1.99 16 22 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 23 H 0.00 -0.29 8.10 -2.39 -0.02 -0.31 16 24 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 25 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 26 H 0.12 4.51 8.14 -2.38 -0.02 4.49 16 27 H 0.43 4.19 9.10 -74.06 -0.67 3.52 16 28 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.46 6.89 -2.39 -0.02 1.44 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.49 8.05 -2.39 -0.02 1.47 16 Total: -1.00 -77.51 289.58 5.30 -72.20 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.47 Total: 7.74 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 2.72 Total: -1.51 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.28 Total: -58.38 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: -0.20 Total: -66.14 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -77.51 5.30 -72.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.378 kcal (2) G-P(sol) polarization free energy of solvation -77.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds