Wall clock time and date at job start Mon Mar 30 2020 18:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00286 * 2 1 4 4 H 1.48499 * 109.46729 * 269.99553 * 3 2 1 5 5 H 1.48493 * 109.47163 * 29.99454 * 3 2 1 6 6 H 1.48496 * 109.47095 * 149.99882 * 3 2 1 7 7 C 1.37878 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99791 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00746 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47551 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99736 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00512 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99758 * 180.02562 * 11 10 9 14 14 C 1.47192 * 125.73680 * 359.85969 * 13 11 10 15 15 C 1.54323 * 107.29513 * 181.03325 * 14 13 11 16 16 C 1.55160 * 102.94127 * 22.28167 * 15 14 13 17 17 H 1.09001 * 111.00142 * 82.57402 * 16 15 14 18 18 C 1.50702 * 111.03580 * 206.41266 * 16 15 14 19 19 O 1.20829 * 120.00023 * 353.66645 * 18 16 15 20 20 O 1.34228 * 120.00049 * 173.67370 * 18 16 15 21 21 C 1.47425 * 125.65016 * 180.02562 * 13 11 10 22 22 H 0.97001 * 119.99658 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46764 * 59.99738 * 9 7 2 24 24 H 1.09003 * 109.46923 * 300.00178 * 9 7 2 25 25 H 0.97001 * 119.99819 * 0.02562 * 10 9 7 26 26 H 1.08999 * 109.79138 * 61.64556 * 14 13 11 27 27 H 1.09001 * 110.07404 * 300.57068 * 14 13 11 28 28 H 1.09004 * 110.71764 * 263.92074 * 15 14 13 29 29 H 1.08991 * 110.87013 * 140.71778 * 15 14 13 30 30 H 0.96695 * 116.99826 * 179.97438 * 20 18 16 31 31 H 1.09002 * 110.36696 * 36.99173 * 21 13 11 32 32 H 1.08995 * 110.36608 * 274.78009 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1151 -1.8976 0.0021 13 7 5.7741 -4.0924 0.0029 14 6 4.9342 -5.3011 0.0062 15 6 5.8823 -6.5185 0.0321 16 6 7.1925 -5.9262 0.6152 17 1 7.1514 -5.8835 1.7036 18 6 8.3934 -6.7108 0.1532 19 8 8.2429 -7.7279 -0.4814 20 8 9.6302 -6.2797 0.4467 21 6 7.1900 -4.5032 0.0037 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6806 -0.8889 25 1 3.3694 -3.3127 0.0021 26 1 4.3216 -5.3273 -0.8949 27 1 4.2951 -5.3102 0.8892 28 1 6.0467 -6.9007 -0.9754 29 1 5.4908 -7.3018 0.6811 30 1 10.3691 -6.8166 0.1293 31 1 7.7815 -3.8249 0.6186 32 1 7.5785 -4.5274 -1.0144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:44 Heat of formation + Delta-G solvation = -118.612334 kcal Electronic energy + Delta-G solvation = -17163.699195 eV Core-core repulsion = 14124.356852 eV Total energy + Delta-G solvation = -3039.342342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87378 -39.58765 -37.32101 -36.38161 -34.30367 -32.51712 -31.64405 -29.48743 -27.83881 -24.64251 -23.12953 -21.80038 -20.63365 -19.57346 -18.40747 -18.18096 -17.33323 -16.48981 -16.04065 -15.49061 -15.25882 -14.51911 -14.30683 -13.74226 -13.55233 -13.22385 -13.06323 -12.74536 -12.35004 -12.08591 -11.95813 -11.80422 -11.61213 -11.16762 -10.99488 -10.85559 -10.75365 -9.96382 -9.65202 -9.46310 -8.78213 -8.60279 -8.01331 -6.20661 -4.22758 1.82272 2.56888 3.07913 3.28548 3.35521 3.44040 3.70252 3.97958 4.31188 4.34655 4.66186 4.71062 4.97107 5.04510 5.08266 5.14981 5.49475 5.60070 5.64516 5.70202 5.85348 6.15203 6.27633 6.76230 7.10812 7.24422 7.37196 7.51361 7.55587 8.24846 8.63838 8.78705 9.14479 9.40333 10.91268 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.056187 B = 0.004559 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.220582 B = 6139.922698 C = 6564.232502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.718 5.718 11 C 0.715 3.285 12 O -0.598 6.598 13 N -0.645 5.645 14 C 0.099 3.901 15 C -0.111 4.111 16 C -0.102 4.102 17 H 0.125 0.875 18 C 0.495 3.505 19 O -0.512 6.512 20 O -0.512 6.512 21 C 0.144 3.856 22 H 0.268 0.732 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.393 0.607 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.411 0.589 31 H 0.091 0.909 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.452 -14.183 1.463 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.370 5.370 11 C 0.417 3.583 12 O -0.477 6.477 13 N -0.386 5.386 14 C -0.025 4.025 15 C -0.149 4.149 16 C -0.122 4.122 17 H 0.143 0.857 18 C 0.337 3.663 19 O -0.400 6.400 20 O -0.323 6.323 21 C 0.019 3.981 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.227 0.773 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.270 0.730 31 H 0.109 0.891 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.411 -13.267 1.424 19.640 hybrid contribution 0.467 0.058 -0.213 0.517 sum 14.878 -13.209 1.211 19.932 Atomic orbital electron populations 1.69881 1.06213 1.27429 1.49504 1.24774 0.94781 0.99150 0.93855 0.86811 0.80607 0.83174 0.79082 1.19837 1.20919 1.18417 1.21079 0.88493 0.95211 1.53286 0.90302 1.19396 0.94891 0.77464 0.96746 1.45409 1.03436 1.11173 1.76977 1.15599 0.83690 0.80780 0.78271 1.90880 1.55500 1.42055 1.59235 1.47553 1.06394 1.04242 1.80405 1.22044 0.94042 0.83765 1.02611 1.22606 0.91922 0.97141 1.03244 1.22253 0.90510 0.95882 1.03527 0.85694 1.23014 0.84141 0.83380 0.75774 1.90735 1.86729 1.25204 1.37300 1.84567 1.16812 1.56660 1.74283 1.21726 0.83628 0.91874 1.00823 0.92258 0.95798 0.96270 0.77338 0.90831 0.90903 0.89146 0.89000 0.72996 0.89111 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.92 9.83 -34.44 -0.34 -15.25 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.24 5.92 4.50 -5.20 -0.02 5.90 16 10 N -0.72 -15.00 5.51 -66.42 -0.37 -15.36 16 11 C 0.71 14.39 8.49 -86.92 -0.74 13.65 16 12 O -0.60 -14.30 16.60 5.29 0.09 -14.22 16 13 N -0.64 -9.59 3.33 -176.12 -0.59 -10.18 16 14 C 0.10 1.08 6.16 -2.97 -0.02 1.06 16 15 C -0.11 -0.98 6.03 -24.89 -0.15 -1.13 16 16 C -0.10 -0.93 3.54 -89.63 -0.32 -1.24 16 17 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 18 C 0.50 4.61 7.63 36.01 0.27 4.88 16 19 O -0.51 -6.07 16.55 -18.75 -0.31 -6.38 16 20 O -0.51 -3.71 13.41 -39.25 -0.53 -4.23 16 21 C 0.14 1.75 6.35 -2.54 -0.02 1.73 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 24 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 25 H 0.39 7.26 7.31 -40.82 -0.30 6.96 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.85 7.50 -51.93 -0.39 0.46 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 1.21 9.10 45.56 0.41 1.62 16 31 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 32 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -35.04 279.06 -5.96 -41.00 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.14 Total: 2.35 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -1.42 Total: 11.72 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.18 Total: -51.24 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.75 Total: -24.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -35.04 -5.96 -41.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.611 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds