Wall clock time and date at job start Mon Mar 30 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00482 * 2 1 4 4 H 1.48499 * 109.47815 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46956 * 300.00249 * 3 2 1 6 6 H 1.48503 * 109.47477 * 59.99518 * 3 2 1 7 7 C 1.37881 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47376 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47678 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99411 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00535 * 180.02562 * 11 10 9 14 14 C 1.45201 * 117.00066 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46781 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.52286 * 54.99883 * 15 14 13 17 17 C 1.53177 * 109.51896 * 175.12561 * 15 14 13 18 18 C 1.53181 * 109.03787 * 176.94962 * 17 15 14 19 19 C 1.53093 * 109.16218 * 303.01964 * 18 17 15 20 20 O 1.42905 * 109.41329 * 57.60476 * 19 18 17 21 21 C 1.43030 * 114.13728 * 298.83738 * 20 19 18 22 22 H 0.97001 * 119.99745 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46960 * 59.99865 * 9 7 2 24 24 H 1.08999 * 109.47219 * 300.00030 * 9 7 2 25 25 H 1.09005 * 109.47213 * 59.99987 * 10 9 7 26 26 H 1.09004 * 109.47380 * 299.99968 * 10 9 7 27 27 H 1.09002 * 109.47114 * 59.99429 * 14 13 11 28 28 H 1.08999 * 109.46926 * 299.99370 * 14 13 11 29 29 H 1.09001 * 109.54414 * 296.81428 * 17 15 14 30 30 H 1.08998 * 109.54571 * 56.99363 * 17 15 14 31 31 H 1.09005 * 109.52357 * 62.91938 * 18 17 15 32 32 H 1.08991 * 109.52488 * 183.11066 * 18 17 15 33 33 H 1.09000 * 109.48150 * 177.58678 * 19 18 17 34 34 H 1.09002 * 109.47828 * 297.62549 * 19 18 17 35 35 H 1.08999 * 109.46933 * 301.19433 * 21 20 19 36 36 H 1.09000 * 109.57180 * 181.11227 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9672 0.0033 12 8 0.2833 -4.9671 0.0033 13 8 2.1626 -6.1297 0.0047 14 6 1.3718 -7.3474 0.0046 15 6 2.3038 -8.5608 0.0057 16 1 2.9924 -8.4904 0.8477 17 6 1.4746 -9.8429 0.1282 18 6 2.4110 -11.0528 0.0515 19 6 3.2009 -10.9946 -1.2586 20 8 3.9247 -9.7641 -1.3226 21 6 3.0977 -8.5973 -1.3028 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.8718 -3.6036 0.8927 26 1 2.8718 -3.6052 -0.8873 27 1 0.7438 -7.3727 -0.8861 28 1 0.7420 -7.3717 0.8939 29 1 0.9500 -9.8480 1.0836 30 1 0.7508 -9.8883 -0.6855 31 1 3.1019 -11.0327 0.8945 32 1 1.8238 -11.9704 0.0824 33 1 3.8998 -11.8300 -1.2991 34 1 2.5121 -11.0555 -2.1013 35 1 2.4076 -8.6268 -2.1460 36 1 3.7215 -7.7064 -1.3745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:52 Heat of formation + Delta-G solvation = -163.196892 kcal Electronic energy + Delta-G solvation = -17168.566384 eV Core-core repulsion = 14230.831053 eV Total energy + Delta-G solvation = -2937.735331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16964 -39.34100 -36.31120 -34.23036 -33.58417 -32.01318 -31.08604 -27.04800 -25.61602 -25.27596 -22.79158 -21.75554 -20.43993 -19.70949 -17.32076 -16.73856 -16.49666 -16.21300 -15.85087 -15.41123 -14.98611 -14.47720 -14.46863 -13.83376 -13.53926 -12.94240 -12.76901 -12.35446 -12.24424 -11.97930 -11.54514 -11.35014 -11.19280 -11.07066 -10.97896 -10.62237 -10.54549 -10.36885 -10.05548 -9.92484 -9.67657 -9.55077 -9.16571 -8.38575 -6.02134 -4.06915 2.81930 3.05244 3.30679 3.38162 3.42012 3.65602 4.42961 4.44222 4.49096 4.57790 4.62354 4.90412 5.06818 5.13722 5.29610 5.33461 5.33631 5.36995 5.45468 5.52997 5.63889 5.69868 5.74414 5.91970 6.03556 6.12044 6.20175 6.64493 6.92548 6.97606 7.66230 7.72692 7.97493 8.25013 8.40790 9.00487 9.57277 11.08947 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.062328 B = 0.003635 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.131484 B = 7701.118964 C = 8005.785631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.507 6.507 13 O -0.366 6.366 14 C 0.070 3.930 15 C -0.121 4.121 16 H 0.091 0.909 17 C -0.117 4.117 18 C -0.154 4.154 19 C 0.057 3.943 20 O -0.382 6.382 21 C 0.066 3.934 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -21.182 -0.939 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.393 6.393 13 O -0.284 6.284 14 C -0.004 4.004 15 C -0.140 4.140 16 H 0.110 0.890 17 C -0.155 4.155 18 C -0.191 4.191 19 C -0.020 4.020 20 O -0.300 6.300 21 C -0.010 4.010 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.914 -21.088 -0.954 21.674 hybrid contribution -0.175 0.824 0.091 0.848 sum 4.739 -20.263 -0.862 20.828 Atomic orbital electron populations 1.70003 1.06107 1.26649 1.50047 1.25028 0.94862 0.99371 0.95125 0.86483 0.80044 0.83526 0.77610 1.19619 1.20971 1.20971 1.21200 0.93127 0.90627 1.51645 0.92225 1.19024 0.93249 0.89338 0.98878 1.21767 1.00660 0.87641 1.04029 1.24785 0.87932 0.85692 0.71584 1.90636 1.15941 1.87713 1.45014 1.86550 1.42072 1.14947 1.84859 1.22876 0.93222 0.81667 1.02644 1.21828 0.98128 0.93152 1.00907 0.89043 1.21576 0.97736 0.93201 1.02970 1.22170 0.99136 0.98417 0.99410 1.22595 0.95941 0.87280 0.96171 1.87982 1.33750 1.13758 1.94529 1.22694 0.94564 0.88603 0.95173 0.92905 0.95594 0.95616 0.88930 0.88931 0.91420 0.91156 0.90938 0.91382 0.90823 0.90676 0.88951 0.93228 0.93091 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.85 4.26 -27.89 -0.12 0.73 16 10 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 11 C 0.46 8.99 7.96 36.01 0.29 9.27 16 12 O -0.51 -11.57 15.73 -18.76 -0.30 -11.86 16 13 O -0.37 -5.94 9.82 -39.25 -0.39 -6.33 16 14 C 0.07 0.93 4.85 37.16 0.18 1.11 16 15 C -0.12 -1.28 2.63 -90.48 -0.24 -1.52 16 16 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.12 -0.98 5.31 -26.55 -0.14 -1.13 16 18 C -0.15 -1.13 6.14 -26.59 -0.16 -1.29 16 19 C 0.06 0.46 6.84 37.21 0.25 0.72 16 20 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 21 C 0.07 0.72 6.01 37.21 0.22 0.95 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 26 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -32.26 302.62 -6.94 -39.20 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.86 Total: -4.04 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.29 Total: -6.96 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.06 Total: -22.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.26 -6.94 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.001 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds