Wall clock time and date at job start Mon Mar 30 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48504 * 109.47084 * 270.00213 * 3 2 1 5 5 H 1.48505 * 109.46997 * 30.00178 * 3 2 1 6 6 H 1.48503 * 109.47150 * 150.00539 * 3 2 1 7 7 C 1.37883 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99517 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47340 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99985 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.45193 * 116.99914 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.46913 * 180.02562 * 14 13 11 16 16 O 1.42899 * 109.47113 * 64.99838 * 15 14 13 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 0.96992 * 120.00329 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47240 * 60.00097 * 9 7 2 23 23 H 1.08994 * 109.46900 * 299.99988 * 9 7 2 24 24 H 1.08997 * 109.47003 * 59.99795 * 10 9 7 25 25 H 1.09004 * 109.46761 * 300.00318 * 10 9 7 26 26 H 1.09000 * 109.47223 * 60.00072 * 14 13 11 27 27 H 1.09002 * 109.47473 * 299.99483 * 14 13 11 28 28 H 1.09007 * 109.46516 * 304.99772 * 15 14 13 29 29 H 1.09004 * 109.47113 * 185.00240 * 15 14 13 30 30 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 31 31 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 32 32 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 33 33 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 35 35 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 36 36 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2835 -4.9673 -0.0020 13 8 2.1630 -6.1297 -0.0018 14 6 1.3722 -7.3474 -0.0030 15 6 2.3042 -8.5608 -0.0029 16 8 3.0451 -8.5923 1.2186 17 6 3.9510 -9.6927 1.3207 18 6 4.6854 -9.6260 2.6613 19 6 6.2017 -9.4249 2.6268 20 6 5.6191 -10.7857 3.0137 21 1 -0.4850 0.8399 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 0.7436 -7.3716 -0.8932 27 1 0.7431 -7.3730 0.8868 28 1 2.9936 -8.4894 -0.8443 29 1 1.7137 -9.4726 -0.0934 30 1 4.6746 -9.6444 0.5068 31 1 3.3950 -10.6281 1.2575 32 1 4.1338 -9.1583 3.4768 33 1 6.6762 -9.3397 1.6492 34 1 6.6480 -8.8247 3.4197 35 1 5.6820 -11.0807 4.0612 36 1 5.7099 -11.5964 2.2907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:16 Heat of formation + Delta-G solvation = -125.685365 kcal Electronic energy + Delta-G solvation = -16638.660729 eV Core-core repulsion = 13702.552020 eV Total energy + Delta-G solvation = -2936.108709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89880 -38.62028 -36.91976 -35.86605 -33.54374 -31.29155 -30.42046 -27.01760 -25.92470 -23.12991 -22.66500 -21.81014 -20.86980 -19.77433 -17.44788 -17.20349 -16.44011 -16.25050 -15.70413 -15.65209 -15.01273 -14.59982 -14.43477 -13.71458 -13.42755 -12.94824 -12.39562 -12.17569 -12.14259 -11.83910 -11.59298 -11.30790 -11.13283 -10.93876 -10.72002 -10.61447 -10.51261 -10.30611 -10.00288 -9.88308 -9.71701 -9.48959 -9.14469 -8.35111 -5.98933 -4.03583 2.89369 3.15724 3.22639 3.33525 3.39694 3.43157 3.61843 4.46421 4.49533 4.59383 4.70898 4.88197 5.01271 5.03639 5.09591 5.20638 5.31965 5.36115 5.36417 5.37957 5.54203 5.60609 5.80297 5.81469 5.93279 6.18056 6.26116 6.69890 6.98513 7.02067 7.69791 7.77397 8.01246 8.30124 8.46951 9.03684 9.60242 11.12185 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.003589 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.747260 B = 7800.742995 C = 8505.658349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.509 6.509 13 O -0.359 6.359 14 C 0.065 3.935 15 C 0.066 3.934 16 O -0.377 6.377 17 C 0.093 3.907 18 C -0.153 4.153 19 C -0.176 4.176 20 C -0.176 4.176 21 H 0.262 0.738 22 H 0.025 0.975 23 H 0.026 0.974 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 -21.418 1.966 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.396 6.396 13 O -0.276 6.276 14 C -0.009 4.009 15 C -0.011 4.011 16 O -0.296 6.296 17 C 0.016 3.984 18 C -0.171 4.171 19 C -0.213 4.213 20 C -0.213 4.213 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.808 -21.193 2.112 23.048 hybrid contribution 0.268 0.601 -0.211 0.692 sum 9.076 -20.592 1.901 22.584 Atomic orbital electron populations 1.69991 1.06099 1.26729 1.50039 1.25026 0.94857 0.99332 0.95162 0.86539 0.79783 0.83233 0.78100 1.20629 1.21202 1.19770 1.21170 0.93089 0.90669 1.51656 0.92300 1.19016 0.93246 0.89306 0.98866 1.21749 1.00640 0.87684 1.03990 1.24764 0.87896 0.85786 0.71513 1.90628 1.15929 1.87765 1.45251 1.86614 1.41650 1.14698 1.84685 1.22926 0.93075 0.81752 1.03142 1.22561 0.94525 0.96313 0.87662 1.87989 1.55785 1.47848 1.37958 1.21992 0.91644 0.89154 0.95601 1.22136 0.92499 1.03583 0.98916 1.23072 0.95530 0.99315 1.03350 1.22973 1.03853 0.92057 1.02429 0.92870 0.95619 0.95588 0.88926 0.89037 0.89907 0.90651 0.92113 0.91366 0.93110 0.93066 0.86742 0.88610 0.88487 0.88441 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.19 5.75 -27.88 -0.16 -2.35 16 11 C 0.46 9.41 7.96 36.00 0.29 9.69 16 12 O -0.51 -11.94 15.73 -18.75 -0.29 -12.24 16 13 O -0.36 -6.31 10.19 -42.02 -0.43 -6.74 16 14 C 0.07 0.91 5.84 37.16 0.22 1.13 16 15 C 0.07 0.71 6.33 37.16 0.24 0.95 16 16 O -0.38 -4.82 10.31 -38.80 -0.40 -5.22 16 17 C 0.09 0.88 6.22 37.16 0.23 1.11 16 18 C -0.15 -1.41 6.06 -90.62 -0.55 -1.96 16 19 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 20 C -0.18 -1.24 10.25 -26.73 -0.27 -1.52 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 23 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 24 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 25 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 27 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -33.32 315.50 -7.33 -40.64 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.86 Total: -3.64 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.82 Total: -7.61 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.12 Total: -24.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.32 -7.33 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.041 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds