Wall clock time and date at job start Mon Mar 30 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99790 * 2 1 4 4 H 1.08000 * 120.00040 * 202.26898 * 3 2 1 5 5 C 1.38812 * 119.99779 * 22.27340 * 3 2 1 6 6 N 1.31612 * 120.00420 * 11.31740 * 5 3 2 7 7 Si 1.86802 * 119.99757 * 191.31079 * 5 3 2 8 8 H 1.48501 * 109.46771 * 60.00010 * 7 5 3 9 9 H 1.48501 * 109.47084 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47349 * 300.00417 * 7 5 3 11 11 C 1.46502 * 120.00007 * 179.97438 * 2 1 3 12 12 N 1.46493 * 109.47087 * 270.00073 * 11 2 1 13 13 C 1.46765 * 124.34874 * 269.95038 * 12 11 2 14 14 C 1.54485 * 105.47328 * 197.04282 * 13 12 11 15 15 H 1.08995 * 110.97120 * 92.70278 * 14 13 12 16 16 C 1.50701 * 110.99856 * 216.45116 * 14 13 12 17 17 O 1.20831 * 120.00400 * 356.88793 * 16 14 13 18 18 O 1.34233 * 119.99821 * 176.88545 * 16 14 13 19 19 C 1.54628 * 101.76269 * 334.58061 * 14 13 12 20 20 C 1.34422 * 124.35325 * 89.97800 * 12 11 2 21 21 O 1.21281 * 124.93463 * 359.53768 * 20 12 11 22 22 H 1.09005 * 109.47120 * 274.30976 * 1 2 3 23 23 H 1.08994 * 109.47381 * 34.31009 * 1 2 3 24 24 H 1.09007 * 109.47107 * 154.31356 * 1 2 3 25 25 H 0.96997 * 120.00520 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.46551 * 149.99797 * 11 2 1 27 27 H 1.08996 * 109.47147 * 30.00627 * 11 2 1 28 28 H 1.08996 * 110.24525 * 78.03999 * 13 12 11 29 29 H 1.09004 * 110.25060 * 316.03989 * 13 12 11 30 30 H 0.96702 * 116.99841 * 180.02562 * 18 16 14 31 31 H 1.09002 * 110.48202 * 143.47574 * 19 14 13 32 32 H 1.08997 * 110.48863 * 265.99099 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1692 1.2209 -0.3544 5 6 1.5332 2.3432 0.4557 6 7 0.3826 2.2698 1.0905 7 14 2.3368 4.0048 0.1680 8 1 2.4940 4.2326 -1.2910 9 1 1.4838 5.0740 0.7463 10 1 3.6711 4.0288 0.8192 11 6 2.1975 -1.2687 0.0006 12 7 2.4416 -1.6910 1.3819 13 6 3.6295 -1.3247 2.1621 14 6 3.6684 -2.3182 3.3446 15 1 4.2804 -3.1874 3.1037 16 6 4.1624 -1.6452 4.5993 17 8 4.5170 -0.4906 4.5661 18 8 4.2083 -2.3285 5.7537 19 6 2.1784 -2.7097 3.4765 20 6 1.6068 -2.4642 2.0975 21 8 0.5489 -2.9009 1.6962 22 1 -0.3633 0.0772 1.0248 23 1 -0.3634 0.8488 -0.5792 24 1 -0.3634 -0.9262 -0.4455 25 1 -0.0484 3.0785 1.4085 26 1 3.1499 -1.1385 -0.5134 27 1 1.6085 -2.0286 -0.5130 28 1 3.5384 -0.3030 2.5307 29 1 4.5276 -1.4280 1.5531 30 1 4.5320 -1.8544 6.5319 31 1 2.0829 -3.7612 3.7473 32 1 1.6824 -2.0799 4.2149 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833691286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:14 Heat of formation + Delta-G solvation = -118.812825 kcal Electronic energy + Delta-G solvation = -18051.318219 eV Core-core repulsion = 15011.967182 eV Total energy + Delta-G solvation = -3039.351036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86989 -40.57040 -37.65353 -37.24551 -36.81022 -33.94820 -32.23605 -28.78231 -28.05306 -27.50664 -25.09030 -23.20538 -21.70134 -20.41795 -19.08734 -18.85987 -18.18612 -17.80755 -16.88303 -16.58856 -16.27282 -16.08530 -15.39896 -15.03938 -14.75301 -14.48072 -14.09372 -13.89992 -13.72443 -13.20996 -12.85010 -12.65998 -12.61768 -12.49013 -12.37422 -12.23414 -12.10246 -11.97360 -11.64494 -10.86493 -10.70359 -9.67856 -9.04510 -7.88896 -5.42267 1.14983 1.44957 1.46719 1.53341 1.65084 1.91754 2.39808 2.47510 3.24023 3.31100 3.42179 3.66944 3.94188 3.98655 4.39305 4.43821 4.51868 4.68475 4.71909 4.78802 4.80490 5.01389 5.19462 5.54711 5.61265 5.62146 5.75136 6.20344 6.36542 6.98895 7.04762 7.27944 7.72888 8.19553 9.14094 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.008596 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.983780 B = 3256.455341 C = 4071.281221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.603 5.603 3 C -0.269 4.269 4 H 0.085 0.915 5 C -0.050 4.050 6 N -0.938 5.938 7 Si 0.972 3.028 8 H -0.272 1.272 9 H -0.299 1.299 10 H -0.274 1.274 11 C 0.357 3.643 12 N -0.617 5.617 13 C 0.113 3.887 14 C -0.081 4.081 15 H 0.172 0.828 16 C 0.500 3.500 17 O -0.545 6.545 18 O -0.501 6.501 19 C -0.130 4.130 20 C 0.503 3.497 21 O -0.584 6.584 22 H -0.008 1.008 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.248 0.752 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.430 0.570 31 H 0.142 0.858 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -11.091 6.233 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.399 4.399 4 H 0.103 0.897 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.800 3.200 8 H -0.198 1.198 9 H -0.225 1.225 10 H -0.199 1.199 11 C 0.150 3.850 12 N -0.355 5.355 13 C -0.010 4.010 14 C -0.100 4.100 15 H 0.189 0.811 16 C 0.342 3.658 17 O -0.436 6.436 18 O -0.315 6.315 19 C -0.170 4.170 20 C 0.290 3.710 21 O -0.465 6.465 22 H 0.010 0.990 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.292 0.708 31 H 0.160 0.840 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.602 -11.025 5.591 15.653 hybrid contribution 0.038 1.757 0.653 1.875 sum 9.640 -9.269 6.245 14.759 Atomic orbital electron populations 1.20435 0.83119 0.95492 0.96930 1.44903 1.02316 1.02533 1.82808 1.19584 0.98570 0.85932 1.35793 0.89744 1.25917 0.98152 1.02328 0.98133 1.70279 1.19259 1.27654 1.41166 0.85278 0.77618 0.79044 0.78106 1.19801 1.22518 1.19942 1.21304 0.96858 0.85870 0.80950 1.50267 1.21296 1.48095 1.15808 1.21984 0.89487 0.97662 0.91903 1.21916 0.97951 1.00818 0.89292 0.81095 1.22966 0.73289 0.84001 0.85498 1.90794 1.46377 1.19891 1.86492 1.84467 1.79043 1.48096 1.19854 1.22287 0.93298 1.06683 0.94761 1.21395 0.83537 0.77661 0.88357 1.90644 1.23739 1.55744 1.76360 0.98982 0.95722 0.96211 0.94325 0.88608 0.91036 0.93154 0.87286 0.70811 0.84028 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.04 9.01 127.77 1.15 11.19 16 2 N -0.60 -30.74 3.17 -738.77 -2.34 -33.08 16 3 C -0.27 -14.51 9.67 84.03 0.81 -13.70 16 4 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 5 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 6 N -0.94 -57.21 10.58 21.65 0.23 -56.99 16 7 Si 0.97 45.33 29.57 68.60 2.03 47.36 16 8 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 9 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.36 14.41 6.50 170.96 1.11 15.52 16 12 N -0.62 -22.84 3.17 -829.72 -2.63 -25.47 16 13 C 0.11 3.46 6.69 86.83 0.58 4.04 16 14 C -0.08 -1.74 3.65 -10.48 -0.04 -1.78 16 15 H 0.17 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.50 11.53 7.55 71.24 0.54 12.06 16 17 O -0.55 -17.63 16.29 21.95 0.36 -17.27 16 18 O -0.50 -7.68 13.42 -51.44 -0.69 -8.37 16 19 C -0.13 -3.34 6.41 30.59 0.20 -3.14 16 20 C 0.50 18.87 8.02 87.90 0.71 19.57 16 21 O -0.58 -26.72 17.60 -3.03 -0.05 -26.78 16 22 H -0.01 -0.51 7.41 -2.38 -0.02 -0.52 16 23 H 0.02 1.39 7.19 -2.39 -0.02 1.37 16 24 H 0.02 0.97 7.84 -2.38 -0.02 0.95 16 25 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 26 H 0.10 3.33 8.03 -2.39 -0.02 3.31 16 27 H 0.07 2.83 7.65 -2.39 -0.02 2.81 16 28 H 0.05 2.00 7.01 -2.39 -0.02 1.99 16 29 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.43 3.19 9.10 -74.06 -0.67 2.52 16 31 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.09 2.62 7.89 -2.39 -0.02 2.61 16 Total: -1.00 -77.97 280.47 2.86 -75.11 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.47 Total: 4.09 kcal Atomic # 6 Polarization: 35.90 SS G_CDS: 5.49 Total: 41.39 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.74 Total: -115.53 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.39 Total: -52.42 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.97 2.86 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833691286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.701 kcal (2) G-P(sol) polarization free energy of solvation -77.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds