Wall clock time and date at job start Mon Mar 30 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 S 1.71198 * 120.00158 * 359.72214 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.46507 * 119.99876 * 179.97438 * 16 14 13 18 18 C 1.52999 * 117.49923 * 223.74790 * 17 16 14 19 19 C 1.52997 * 117.49798 * 155.08685 * 17 16 14 20 20 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 21 21 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 22 22 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 25 25 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 26 26 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 28 28 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 29 29 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 30 30 H 0.97000 * 120.00523 * 0.02562 * 16 14 13 31 31 H 1.08995 * 115.54817 * 9.42427 * 17 16 14 32 32 H 1.09004 * 117.50082 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49430 * 145.02123 * 18 17 16 34 34 H 1.08995 * 117.50039 * 214.98179 * 19 17 16 35 35 H 1.09003 * 117.49972 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 16 2.8660 -1.8796 3.8267 16 7 1.4372 0.1510 4.7699 17 6 1.7956 -0.3462 6.1006 18 6 0.6898 -0.3986 7.1567 19 6 1.7927 0.6584 7.2545 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 0.7090 1.1613 -3.4845 27 1 3.1300 -0.7216 1.2491 28 1 1.6766 -1.7488 1.2493 29 1 0.9942 0.7584 2.3564 30 1 0.8792 0.9394 4.6809 31 1 2.5488 -1.1339 6.1209 32 1 -0.3045 -0.0635 6.8614 33 1 0.7158 -1.2206 7.8721 34 1 2.5437 0.5314 8.0342 35 1 1.5246 1.6893 7.0236 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840844620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:52 Heat of formation + Delta-G solvation = 32.837234 kcal Electronic energy + Delta-G solvation = -15460.521898 eV Core-core repulsion = 13006.332867 eV Total energy + Delta-G solvation = -2454.189031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18681 -37.56832 -35.34731 -32.82585 -30.84180 -25.87518 -25.83198 -25.15286 -23.30553 -22.62717 -22.17294 -19.20576 -18.29880 -16.95293 -15.91445 -15.24801 -15.14413 -14.64522 -14.52974 -14.02582 -13.06522 -12.98371 -12.87508 -12.35351 -11.84166 -11.69918 -11.32941 -11.05656 -10.83245 -10.77762 -10.69238 -10.66456 -10.30991 -10.25473 -9.71500 -9.50872 -8.92546 -8.61238 -8.43198 -7.47640 -7.02181 -6.08788 -4.18952 1.73164 2.29224 2.83843 3.29012 3.32845 3.37394 3.68161 3.85434 4.36889 4.54257 4.71332 4.80540 5.18643 5.36209 5.56530 5.68691 5.81588 5.97468 6.21433 6.24849 6.36588 6.60994 6.63553 6.73129 6.88622 6.91553 7.08283 7.27177 7.41741 7.58886 7.67243 7.88210 8.03729 8.29272 8.81568 9.47533 10.92954 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047498 B = 0.005134 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.362517 B = 5452.299074 C = 5782.063944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.133 3.867 13 N -0.659 5.659 14 C 0.565 3.435 15 S -0.664 6.664 16 N -0.673 5.673 17 C 0.085 3.915 18 C -0.190 4.190 19 C -0.189 4.189 20 H 0.001 0.999 21 H 0.088 0.912 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.001 0.999 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.396 0.604 30 H 0.394 0.606 31 H 0.166 0.834 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 3.363 13.962 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.011 3.989 13 N -0.284 5.284 14 C 0.203 3.797 15 S -0.540 6.540 16 N -0.303 5.303 17 C -0.021 4.021 18 C -0.229 4.229 19 C -0.228 4.228 20 H 0.020 0.980 21 H 0.107 0.893 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.107 0.893 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.233 0.767 30 H 0.230 0.770 31 H 0.184 0.816 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.765 2.459 13.799 14.127 hybrid contribution -0.846 1.150 -0.955 1.718 sum -2.611 3.609 12.844 13.595 Atomic orbital electron populations 1.21875 0.97776 0.99426 0.99970 1.18438 0.92778 0.92773 0.90568 1.21877 0.98910 0.98297 0.99975 1.20895 1.31722 1.12284 0.89495 0.92049 1.24874 0.94736 0.94879 0.98945 1.69780 1.36610 1.22738 1.23486 0.86580 0.79340 0.79812 0.81880 1.20136 1.21355 1.20141 1.22275 0.99735 0.96384 0.80466 1.45699 1.48358 1.29827 1.04556 1.22177 0.85433 0.90430 0.81656 1.93243 1.47498 1.19250 1.94015 1.44179 1.51985 1.29969 1.04167 1.22170 1.02168 1.01468 0.76323 1.23432 0.94936 1.01977 1.02556 1.23412 1.02366 0.95947 1.01087 0.98044 0.89326 0.95073 0.95068 0.89324 0.98038 0.92877 0.90447 0.90456 0.76662 0.76953 0.81647 0.88724 0.87583 0.87505 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.70 3.96 -4.04 -0.02 2.68 16 13 N -0.66 -10.94 4.96 -62.03 -0.31 -11.25 16 14 C 0.56 9.26 7.98 -86.92 -0.69 8.57 16 15 S -0.66 -13.55 27.11 -107.50 -2.91 -16.46 16 16 N -0.67 -8.20 5.57 -55.52 -0.31 -8.51 16 17 C 0.09 0.95 6.26 -67.93 -0.43 0.52 16 18 C -0.19 -1.61 10.46 -26.69 -0.28 -1.89 16 19 C -0.19 -1.52 10.46 -26.69 -0.28 -1.80 16 20 H 0.00 0.01 6.86 -51.93 -0.36 -0.34 16 21 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 25 H 0.00 0.01 6.86 -51.93 -0.36 -0.34 16 26 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 27 H 0.08 1.69 7.99 -51.92 -0.41 1.27 16 28 H 0.08 1.69 8.00 -51.93 -0.42 1.27 16 29 H 0.40 5.81 6.18 -40.82 -0.25 5.55 16 30 H 0.39 3.71 8.84 -40.82 -0.36 3.35 16 31 H 0.17 2.22 6.43 -51.93 -0.33 1.89 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -28.46 295.00 -10.33 -38.78 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.20 Total: 7.58 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.54 Total: -7.45 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.10 Total: -42.34 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -13.55 SS G_CDS: -2.91 Total: -16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.46 -10.33 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840844620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.621 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds