Wall clock time and date at job start Mon Mar 30 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 S 1.71198 * 120.00158 * 359.72214 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.46507 * 119.99876 * 179.97438 * 16 14 13 18 18 C 1.52999 * 117.49923 * 223.74790 * 17 16 14 19 19 C 1.52997 * 117.49798 * 155.08685 * 17 16 14 20 20 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 21 21 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 22 22 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 25 25 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 26 26 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 28 28 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 29 29 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 30 30 H 0.97000 * 120.00523 * 0.02562 * 16 14 13 31 31 H 1.08995 * 115.54817 * 9.42427 * 17 16 14 32 32 H 1.09004 * 117.50082 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49430 * 145.02123 * 18 17 16 34 34 H 1.08995 * 117.50039 * 214.98179 * 19 17 16 35 35 H 1.09003 * 117.49972 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 16 2.8660 -1.8796 3.8267 16 7 1.4372 0.1510 4.7699 17 6 1.7956 -0.3462 6.1006 18 6 0.6898 -0.3986 7.1567 19 6 1.7927 0.6584 7.2545 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 0.7090 1.1613 -3.4845 27 1 3.1300 -0.7216 1.2491 28 1 1.6766 -1.7488 1.2493 29 1 0.9942 0.7584 2.3564 30 1 0.8792 0.9394 4.6809 31 1 2.5488 -1.1339 6.1209 32 1 -0.3045 -0.0635 6.8614 33 1 0.7158 -1.2206 7.8721 34 1 2.5437 0.5314 8.0342 35 1 1.5246 1.6893 7.0236 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840844620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:51 Heat of formation + Delta-G solvation = 16.537075 kcal Electronic energy + Delta-G solvation = -15461.228726 eV Core-core repulsion = 13006.332867 eV Total energy + Delta-G solvation = -2454.895859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43017 -38.84399 -36.78094 -34.27839 -32.52812 -27.63197 -27.55482 -26.91558 -24.71390 -23.27602 -23.15786 -20.87074 -19.67495 -18.14077 -17.75039 -16.74532 -16.45865 -16.07753 -15.95202 -15.26766 -14.80637 -14.41147 -14.12012 -13.73327 -13.29564 -13.16288 -12.78101 -12.62931 -12.43030 -12.36282 -12.27113 -12.13443 -11.77075 -11.49302 -11.36126 -11.29669 -10.77527 -10.39728 -9.77444 -9.01923 -8.61188 -8.04199 -6.19213 0.39017 0.91941 1.45455 1.46499 1.51535 1.57509 2.44826 2.63383 2.94265 3.20506 3.74334 4.02989 4.10818 4.26456 4.47155 4.57872 4.71689 4.76004 4.89044 4.95860 4.99419 5.01619 5.13435 5.15190 5.20896 5.42876 5.61174 5.62792 5.67482 5.92660 6.10218 6.17170 6.38981 6.46061 6.84403 7.48752 8.94682 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047498 B = 0.005134 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.362517 B = 5452.299074 C = 5782.063944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.031 3.969 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.157 3.843 13 N -0.653 5.653 14 C 0.585 3.415 15 S -0.747 6.747 16 N -0.642 5.642 17 C 0.045 3.955 18 C -0.174 4.174 19 C -0.163 4.163 20 H 0.035 0.965 21 H 0.064 0.936 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.415 0.585 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 4.875 15.633 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.051 3.949 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.169 4.169 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.034 3.966 13 N -0.280 5.280 14 C 0.220 3.780 15 S -0.624 6.624 16 N -0.272 5.272 17 C -0.061 4.061 18 C -0.213 4.213 19 C -0.201 4.201 20 H 0.054 0.946 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.254 0.746 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.880 4.016 15.527 16.295 hybrid contribution -0.548 0.734 -1.351 1.632 sum -3.428 4.749 14.177 15.339 Atomic orbital electron populations 1.21707 0.97051 0.98885 1.00416 1.18413 0.93256 0.93030 0.90201 1.21709 0.98187 0.97750 1.00422 1.21183 1.31823 1.12279 0.91272 0.93505 1.25401 0.95072 0.95536 1.00874 1.69878 1.36945 1.23217 1.23718 0.85839 0.78673 0.78854 0.79602 1.20279 1.20865 1.20290 1.21682 0.98353 0.95417 0.81154 1.45236 1.48910 1.30196 1.03647 1.21593 0.84663 0.89310 0.82469 1.93439 1.51139 1.23203 1.94590 1.44149 1.50142 1.29388 1.03482 1.22242 1.04110 1.03417 0.76371 1.23524 0.94922 1.02406 1.00410 1.23528 1.01900 0.96154 0.98514 0.94647 0.91703 0.96067 0.96060 0.91702 0.94636 0.92998 0.92387 0.92406 0.74984 0.74588 0.84372 0.87559 0.86786 0.86299 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.22 8.01 25.60 0.21 -27.01 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.03 1.61 5.15 84.65 0.44 2.04 16 7 N -0.90 -46.77 9.35 21.45 0.20 -46.57 16 8 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.16 6.37 3.96 86.38 0.34 6.71 16 13 N -0.65 -20.54 4.96 -350.16 -1.74 -22.27 16 14 C 0.59 18.43 7.98 179.05 1.43 19.86 16 15 S -0.75 -31.09 27.11 -56.49 -1.53 -32.62 16 16 N -0.64 -13.93 5.57 -329.57 -1.84 -15.77 16 17 C 0.04 0.89 6.26 44.99 0.28 1.18 16 18 C -0.17 -2.35 10.46 30.62 0.32 -2.03 16 19 C -0.16 -1.99 10.46 30.62 0.32 -1.67 16 20 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 21 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 22 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 25 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 26 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 27 H 0.06 2.58 7.99 -2.38 -0.02 2.56 16 28 H 0.06 2.57 8.00 -2.39 -0.02 2.55 16 29 H 0.41 10.67 6.18 -92.71 -0.57 10.09 16 30 H 0.41 6.08 8.84 -92.71 -0.82 5.26 16 31 H 0.14 3.67 6.43 -2.39 -0.02 3.66 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -63.12 295.00 1.30 -61.82 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.30 Total: 19.08 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.47 Total: -7.87 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -3.37 Total: -84.61 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -31.09 SS G_CDS: -1.53 Total: -32.62 kcal Total: -63.12 1.30 -61.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840844620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.357 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds