Wall clock time and date at job start Mon Mar 30 2020 18:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00221 * 2 1 4 4 O 1.42898 * 109.47066 * 134.99924 * 3 2 1 5 5 C 1.42896 * 113.99931 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47335 * 179.97438 * 5 4 3 7 7 S 1.81406 * 109.47291 * 179.97438 * 6 5 4 8 8 C 1.81397 * 103.00166 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47174 * 181.60710 * 8 7 6 10 10 C 1.50696 * 115.54860 * 305.21944 * 9 8 7 11 11 H 1.08002 * 120.00225 * 278.21059 * 10 9 8 12 12 C 1.37878 * 119.99672 * 97.94116 * 10 9 8 13 13 N 1.31521 * 120.00146 * 181.34555 * 12 10 9 14 14 Si 1.86796 * 120.00156 * 1.34746 * 12 10 9 15 15 H 1.48498 * 109.47513 * 92.60368 * 14 12 10 16 16 H 1.48507 * 109.47183 * 212.60603 * 14 12 10 17 17 H 1.48503 * 109.47191 * 332.60206 * 14 12 10 18 18 C 1.52998 * 117.51546 * 90.92566 * 9 8 7 19 19 C 1.52995 * 60.00079 * 107.48178 * 18 9 8 20 20 H 1.08003 * 120.00090 * 180.02562 * 1 2 3 21 21 H 1.08004 * 119.99903 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.99903 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47234 * 14.99733 * 3 2 1 24 24 H 1.08998 * 109.47108 * 254.99693 * 3 2 1 25 25 H 1.09003 * 109.47676 * 59.99791 * 5 4 3 26 26 H 1.09008 * 109.47333 * 300.00048 * 5 4 3 27 27 H 1.09004 * 109.46952 * 59.99925 * 6 5 4 28 28 H 1.08995 * 109.47126 * 300.00085 * 6 5 4 29 29 H 1.09005 * 109.46660 * 61.60654 * 8 7 6 30 30 H 1.09009 * 109.47147 * 301.61103 * 8 7 6 31 31 H 0.96990 * 120.00270 * 179.97438 * 13 12 10 32 32 H 1.09007 * 117.49366 * 214.96984 * 18 9 8 33 33 H 1.08992 * 117.50077 * 359.97438 * 18 9 8 34 34 H 1.09004 * 117.49474 * 252.50759 * 19 18 9 35 35 H 1.09001 * 117.52275 * 107.48578 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0329 6 6 5.0098 2.2544 2.0786 7 16 6.0018 3.7698 2.1798 8 6 7.2332 3.3675 3.4496 9 6 8.1378 4.5787 3.6847 10 6 8.8145 5.1325 2.4574 11 1 9.7176 4.6724 2.0846 12 6 8.2775 6.2233 1.8071 13 7 8.8532 6.6904 0.7208 14 14 6.7323 7.0378 2.4691 15 1 7.1094 8.1488 3.3795 16 1 5.9322 7.5741 1.3387 17 1 5.9265 6.0382 3.2153 18 6 7.7204 5.5725 4.7706 19 6 8.9094 4.6386 5.0045 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 -0.0004 22 1 1.8499 -0.9354 0.0004 23 1 1.3855 2.1161 0.2659 24 1 2.4755 1.4867 -0.9926 25 1 3.2678 3.2694 1.3205 26 1 4.3580 2.6407 0.0617 27 1 5.6499 1.4201 1.7913 28 1 4.5592 2.0491 3.0496 29 1 7.8362 2.5229 3.1161 30 1 6.7256 3.1072 4.3785 31 1 8.4752 7.4575 0.2631 32 1 7.9352 6.6270 4.5971 33 1 6.8009 5.3637 5.3173 34 1 8.7723 3.8152 5.7055 35 1 9.9067 5.0782 4.9851 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853775071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:45 Heat of formation + Delta-G solvation = -3.233095 kcal Electronic energy + Delta-G solvation = -14898.300779 eV Core-core repulsion = 12410.254870 eV Total energy + Delta-G solvation = -2488.045909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.17534 -37.03207 -34.23249 -32.03206 -30.96424 -28.04810 -26.04636 -25.38231 -22.81263 -21.79126 -20.15389 -19.02091 -16.97961 -16.38457 -16.27606 -15.42581 -15.26260 -14.72194 -14.30625 -13.96799 -13.50254 -13.18935 -12.89217 -12.76585 -12.47369 -11.88454 -11.61474 -11.50976 -11.14102 -11.06114 -10.74722 -10.32049 -10.17046 -9.97035 -9.81102 -9.46609 -9.04326 -8.91261 -8.53597 -8.37401 -6.76150 -6.04666 -4.09747 1.85857 2.17742 3.31832 3.43142 3.51676 3.64673 3.91527 4.53036 4.75581 4.89082 4.92604 5.08193 5.18835 5.23178 5.24662 5.34566 5.54629 5.60644 5.63230 5.87553 5.90545 5.97780 6.06593 6.11617 6.30060 6.36015 6.40435 6.43791 6.66046 6.98718 7.06864 7.13221 7.74004 8.51095 8.94652 9.57792 11.06187 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.033311 B = 0.005229 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.371204 B = 5353.515018 C = 5722.523573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.386 6.386 5 C 0.083 3.917 6 C -0.120 4.120 7 S -0.200 6.200 8 C -0.036 4.036 9 C 0.014 3.986 10 C -0.491 4.491 11 H 0.078 0.922 12 C 0.092 3.908 13 N -0.895 5.895 14 Si 0.848 3.152 15 H -0.284 1.284 16 H -0.297 1.297 17 H -0.212 1.212 18 C -0.200 4.200 19 C -0.175 4.175 20 H 0.103 0.897 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 -9.665 1.705 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.010 3.990 4 O -0.306 6.306 5 C 0.006 3.994 6 C -0.268 4.268 7 S 0.027 5.973 8 C -0.185 4.185 9 C 0.012 3.988 10 C -0.528 4.528 11 H 0.096 0.904 12 C -0.111 4.111 13 N -0.532 5.532 14 Si 0.677 3.323 15 H -0.211 1.211 16 H -0.224 1.224 17 H -0.136 1.136 18 C -0.236 4.236 19 C -0.215 4.215 20 H 0.121 0.879 21 H 0.116 0.884 22 H 0.134 0.866 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.082 -8.780 1.071 15.792 hybrid contribution -0.641 -0.359 0.757 1.055 sum -13.723 -9.139 1.828 16.589 Atomic orbital electron populations 1.23826 0.95568 1.02203 1.00602 1.22782 0.95633 0.98317 0.99784 1.21528 0.89012 0.95668 0.92748 1.87874 1.44607 1.37659 1.60504 1.22092 0.91905 0.86715 0.98703 1.23367 0.99507 1.02417 1.01481 1.87520 1.35688 1.17648 1.56488 1.23080 0.97009 1.02080 0.96323 1.19084 0.96348 0.92886 0.90451 1.20164 1.11028 1.13640 1.07972 0.90374 1.24866 0.96097 0.96083 0.94048 1.69870 1.40335 1.24779 1.18173 0.87226 0.85163 0.80997 0.78901 1.21146 1.22391 1.13642 1.22986 0.97878 0.97212 1.05574 1.22970 0.96449 1.01286 1.00759 0.87866 0.88426 0.86594 0.92772 0.92169 0.92566 0.92142 0.90078 0.90464 0.90672 0.92447 0.92608 0.89449 0.90483 0.90967 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.31 29.02 0.42 -1.10 16 2 C -0.15 -1.46 9.89 -36.02 -0.36 -1.81 16 3 C 0.09 0.98 6.35 36.01 0.23 1.21 16 4 O -0.39 -5.53 10.33 -35.23 -0.36 -5.90 16 5 C 0.08 1.24 5.95 37.16 0.22 1.46 16 6 C -0.12 -1.95 6.31 37.16 0.23 -1.71 16 7 S -0.20 -4.14 17.22 -107.50 -1.85 -5.99 16 8 C -0.04 -0.73 5.87 37.16 0.22 -0.52 16 9 C 0.01 0.33 1.39 -155.67 -0.22 0.11 16 10 C -0.49 -13.60 8.91 -34.44 -0.31 -13.91 16 11 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 12 C 0.09 2.65 5.29 -17.82 -0.09 2.56 16 13 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 14 Si 0.85 21.39 22.54 -169.99 -3.83 17.56 16 15 H -0.28 -7.11 6.96 56.52 0.39 -6.72 16 16 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 17 H -0.21 -4.96 4.80 56.52 0.27 -4.69 16 18 C -0.20 -4.23 6.91 -26.73 -0.18 -4.42 16 19 C -0.18 -3.48 9.95 -26.73 -0.27 -3.75 16 20 H 0.10 0.69 8.06 -52.48 -0.42 0.26 16 21 H 0.10 0.72 7.90 -52.48 -0.41 0.31 16 22 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 23 H 0.05 0.56 7.86 -51.93 -0.41 0.15 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 27 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 30 H 0.06 1.02 8.09 -51.92 -0.42 0.60 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.09 1.99 5.74 -51.92 -0.30 1.69 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -30.33 299.41 -6.76 -37.09 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.89 Total: 1.28 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.11 Total: -21.88 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.36 Total: -5.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.83 Total: 17.56 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.85 Total: -5.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.33 -6.76 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853775071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.856 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds