Wall clock time and date at job start Mon Mar 30 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46842 * 2 1 4 4 C 1.37105 * 119.99747 * 269.18916 * 3 2 1 5 5 H 1.08001 * 119.99858 * 141.23987 * 4 3 2 6 6 C 1.38946 * 120.00172 * 321.24520 * 4 3 2 7 7 N 1.31414 * 119.99957 * 339.43191 * 6 4 3 8 8 Si 1.86800 * 120.00185 * 159.43287 * 6 4 3 9 9 H 1.48504 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47153 * 119.99679 * 8 6 4 11 11 H 1.48497 * 109.47441 * 240.00194 * 8 6 4 12 12 C 1.34771 * 120.00515 * 89.19671 * 3 2 1 13 13 O 1.21292 * 120.00699 * 179.97438 * 12 3 2 14 14 C 1.50702 * 119.99622 * 359.97438 * 12 3 2 15 15 H 1.09002 * 109.39900 * 319.82372 * 14 12 3 16 16 C 1.53101 * 109.41471 * 79.49179 * 14 12 3 17 17 C 1.53476 * 108.39330 * 168.03458 * 16 14 12 18 18 O 1.45433 * 108.14894 * 298.36514 * 17 16 14 19 19 C 1.34215 * 117.18035 * 46.41586 * 18 17 16 20 20 O 1.21511 * 118.45845 * 163.20460 * 19 18 17 21 21 N 1.33736 * 123.07935 * 343.18610 * 19 18 17 22 22 H 1.09000 * 109.47390 * 300.00258 * 1 2 3 23 23 H 1.09001 * 109.47046 * 60.00513 * 1 2 3 24 24 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47390 * 239.99742 * 2 1 3 26 26 H 1.09001 * 109.47046 * 119.99487 * 2 1 3 27 27 H 0.97004 * 119.99742 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.61092 * 48.34155 * 16 14 12 29 29 H 1.09003 * 109.73244 * 287.79841 * 16 14 12 30 30 H 1.08999 * 109.73666 * 178.69158 * 17 16 14 31 31 H 1.08998 * 109.73465 * 58.03879 * 17 16 14 32 32 H 0.96996 * 118.51831 * 182.31512 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0220 -1.1873 5 1 2.0123 3.0667 -1.2986 6 6 2.8318 1.3272 -2.2474 7 7 3.4984 0.2171 -2.0230 8 14 2.6497 1.9711 -3.9914 9 1 1.8608 3.2291 -3.9747 10 1 3.9940 2.2380 -4.5634 11 1 1.9503 0.9585 -4.8224 12 6 2.2274 2.0222 1.1670 13 8 2.6321 3.1656 1.1670 14 6 1.9585 1.3181 2.4720 15 1 1.0469 0.7270 2.3833 16 6 3.1316 0.3910 2.8012 17 6 2.9840 -0.0793 4.2547 18 8 3.0398 1.0904 5.1171 19 6 2.2983 2.1509 4.7607 20 8 2.0758 3.0079 5.5929 21 7 1.7931 2.3086 3.5325 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8955 -0.2681 -2.7632 28 1 4.0701 0.9329 2.6841 29 1 3.1186 -0.4704 2.1335 30 1 3.7971 -0.7605 4.5055 31 1 2.0272 -0.5854 4.3824 32 1 1.2947 3.1175 3.3372 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858756342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:55 Heat of formation + Delta-G solvation = -130.360636 kcal Electronic energy + Delta-G solvation = -18290.115061 eV Core-core repulsion = 15250.263274 eV Total energy + Delta-G solvation = -3039.851787 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21993 -40.42147 -38.27002 -37.12918 -36.26908 -34.05290 -32.55469 -31.18073 -28.69359 -26.44539 -25.15476 -23.86478 -21.49682 -21.00157 -19.37509 -18.80692 -18.52020 -18.11269 -17.24478 -16.70769 -16.21069 -15.83999 -15.65809 -15.51367 -14.83877 -14.68152 -14.43191 -13.69826 -13.59188 -13.41706 -13.01676 -12.83519 -12.72677 -12.56203 -12.32428 -12.08831 -11.79878 -11.69940 -11.62693 -10.92689 -10.78283 -10.12963 -9.45748 -8.37476 -6.11071 1.33710 1.42829 1.51972 1.53947 1.59233 1.93930 2.25739 2.46834 2.92146 2.97093 3.50440 3.65297 3.81774 3.92822 4.24121 4.29046 4.35536 4.63553 4.64553 4.83564 4.90758 4.95440 5.11385 5.35904 5.45766 5.59481 5.64295 6.19253 6.45964 6.55985 6.93744 7.14144 7.39587 7.97339 8.64401 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038489 B = 0.006945 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.310172 B = 4030.759768 C = 4215.116435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.085 3.915 3 N -0.437 5.437 4 C -0.344 4.344 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.879 5.879 8 Si 0.975 3.025 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.261 1.261 12 C 0.435 3.565 13 O -0.624 6.624 14 C 0.127 3.873 15 H 0.129 0.871 16 C -0.162 4.162 17 C 0.064 3.936 18 O -0.355 6.355 19 C 0.664 3.336 20 O -0.586 6.586 21 N -0.702 5.702 22 H 0.055 0.945 23 H 0.039 0.961 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.275 0.725 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -9.787 4.518 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.037 4.037 3 N -0.155 5.155 4 C -0.472 4.472 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.516 5.516 8 Si 0.799 3.201 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.186 1.186 12 C 0.223 3.777 13 O -0.510 6.510 14 C 0.019 3.981 15 H 0.146 0.854 16 C -0.200 4.200 17 C -0.009 4.009 18 O -0.267 6.267 19 C 0.418 3.582 20 O -0.476 6.476 21 N -0.367 5.367 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.132 0.868 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.107 -9.286 5.048 11.339 hybrid contribution 0.003 0.999 -1.449 1.760 sum -4.104 -8.287 3.599 9.923 Atomic orbital electron populations 1.22135 0.95260 1.02811 1.01407 1.21916 0.94288 0.83088 1.04450 1.43718 1.55035 1.13284 1.03503 1.19338 1.41898 0.96502 0.89464 0.92231 1.25990 0.93160 0.96687 1.03269 1.69942 1.30028 1.17981 1.33619 0.85171 0.78058 0.78719 0.78174 1.19948 1.20744 1.18586 1.21127 0.82075 0.88085 0.86381 1.90543 1.51726 1.21050 1.87681 1.21207 1.02221 0.89726 0.84933 0.85374 1.22564 0.96871 1.00996 0.99605 1.23982 1.07720 0.83740 0.85448 1.86647 1.62887 1.24466 1.52657 1.17772 0.76385 0.82104 0.81968 1.90958 1.62748 1.42505 1.51349 1.45155 1.57091 1.25231 1.09201 0.92601 0.94218 0.89233 0.89469 0.89671 0.91501 0.91843 0.84773 0.82825 0.86819 0.74466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 10.09 71.98 0.73 -3.74 16 2 C 0.09 2.99 5.32 86.38 0.46 3.45 16 3 N -0.44 -19.86 2.51 -635.54 -1.60 -21.45 16 4 C -0.34 -18.17 8.88 84.04 0.75 -17.42 16 5 H 0.06 3.46 7.79 -2.91 -0.02 3.43 16 6 C 0.01 0.64 4.96 84.92 0.42 1.06 16 7 N -0.88 -43.16 11.51 21.66 0.25 -42.91 16 8 Si 0.97 39.91 29.60 68.60 2.03 41.94 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 12 C 0.44 19.44 6.79 87.66 0.60 20.03 16 13 O -0.62 -34.31 16.28 -3.07 -0.05 -34.36 16 14 C 0.13 4.00 2.70 44.36 0.12 4.12 16 15 H 0.13 3.13 6.05 -2.39 -0.01 3.12 16 16 C -0.16 -4.16 5.34 30.79 0.16 -4.00 16 17 C 0.06 1.20 7.20 72.14 0.52 1.72 16 18 O -0.36 -10.74 10.50 -51.21 -0.54 -11.28 16 19 C 0.66 24.04 8.55 129.95 1.11 25.15 16 20 O -0.59 -25.46 17.95 19.93 0.36 -25.10 16 21 N -0.70 -24.01 4.85 -577.07 -2.80 -26.81 16 22 H 0.05 1.42 7.07 -2.39 -0.02 1.41 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.09 3.55 5.59 -2.39 -0.01 3.53 16 26 H 0.09 2.35 4.70 -2.39 -0.01 2.34 16 27 H 0.28 12.62 8.31 -92.71 -0.77 11.85 16 28 H 0.06 2.03 8.09 -2.39 -0.02 2.01 16 29 H 0.13 2.85 6.19 -2.39 -0.01 2.84 16 30 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.42 14.96 8.51 -92.71 -0.79 14.17 16 Total: -1.00 -72.25 269.22 2.89 -69.36 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.37 Total: 20.24 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 4.86 Total: 30.38 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.15 Total: -91.17 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -0.23 Total: -70.74 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -72.25 2.89 -69.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858756342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.004 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds