Wall clock time and date at job start Mon Mar 30 2020 18:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31510 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00029 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47190 * 90.00302 * 9 7 5 11 11 H 1.48498 * 109.47233 * 210.00871 * 9 7 5 12 12 H 1.48503 * 109.46978 * 330.00665 * 9 7 5 13 13 O 1.45200 * 109.47292 * 295.00145 * 3 2 1 14 14 C 1.34236 * 117.00099 * 89.99460 * 13 3 2 15 15 O 1.20826 * 119.99519 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00297 * 179.97438 * 14 13 3 17 17 C 1.53777 * 113.62018 * 277.50432 * 16 14 13 18 18 C 1.53777 * 87.08269 * 220.01688 * 17 16 14 19 19 O 1.42901 * 113.61591 * 139.97967 * 18 17 16 20 20 C 1.42900 * 114.00046 * 112.50103 * 19 18 17 21 21 C 1.53777 * 87.08374 * 25.43199 * 18 17 16 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 0.97005 * 119.99902 * 179.97438 * 8 7 5 28 28 H 1.09006 * 112.84972 * 48.81018 * 16 14 13 29 29 H 1.09000 * 113.61051 * 334.56717 * 17 16 14 30 30 H 1.09003 * 113.61658 * 105.46881 * 17 16 14 31 31 H 1.09000 * 113.61599 * 270.88555 * 18 17 16 32 32 H 1.09003 * 109.47201 * 60.00692 * 20 19 18 33 33 H 1.09000 * 109.46988 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47178 * 300.00018 * 20 19 18 35 35 H 1.09004 * 113.61682 * 220.02052 * 21 18 17 36 36 H 1.09000 * 113.61969 * 89.11356 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8797 1.3357 9 14 3.0965 0.1099 2.5705 10 1 2.8748 -1.3262 2.2643 11 1 3.7942 0.2359 3.8753 12 1 1.7881 0.8090 2.6393 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0073 3.4226 -2.5083 17 6 0.5958 4.8324 -2.6835 18 6 -0.7917 5.2637 -3.1868 19 8 -1.1962 6.5514 -2.7174 20 6 -1.2813 7.5434 -3.7424 21 6 -1.3659 4.0994 -2.3626 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 5.8771 0.4818 2.1126 28 1 0.0941 2.7981 -3.3975 29 1 0.8859 5.3042 -1.7447 30 1 1.3737 4.8893 -3.4450 31 1 -0.9229 5.1438 -4.2622 32 1 -2.0094 7.2308 -4.4910 33 1 -1.5945 8.4916 -3.3054 34 1 -0.3056 7.6644 -4.2129 35 1 -2.1719 3.5644 -2.8651 36 1 -1.6122 4.3707 -1.3361 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860695982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:17 Heat of formation + Delta-G solvation = -113.159432 kcal Electronic energy + Delta-G solvation = -17978.919769 eV Core-core repulsion = 15043.354225 eV Total energy + Delta-G solvation = -2935.565543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.37839 -38.81039 -36.42570 -35.42260 -33.55226 -31.90599 -28.07692 -27.31769 -25.76782 -25.66343 -22.83539 -21.60949 -20.12306 -19.26159 -17.79446 -16.66270 -16.50726 -15.93799 -15.80907 -15.25836 -14.82317 -14.60453 -13.93498 -13.50716 -12.86292 -12.58861 -12.47872 -12.24158 -11.99920 -11.90604 -11.64195 -11.45799 -11.33617 -11.11553 -10.93498 -10.78491 -10.69352 -10.02332 -9.84568 -9.60466 -9.59543 -9.41279 -9.05971 -8.64605 -6.22322 -4.24403 2.83867 3.18844 3.31351 3.34006 3.37642 3.88047 4.27119 4.39697 4.50422 4.71511 4.75683 5.07338 5.10256 5.20997 5.29570 5.46576 5.53131 5.66054 5.76378 5.82402 5.91876 5.95684 5.96808 6.02646 6.22002 6.46347 6.56740 6.68515 6.74823 7.07867 7.11034 7.39454 7.55870 8.25719 8.64114 8.85656 9.35116 10.89751 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037984 B = 0.005705 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.967398 B = 4906.934384 C = 5267.184127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.195 3.805 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.339 6.339 14 C 0.464 3.536 15 O -0.516 6.516 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.061 3.939 19 O -0.374 6.374 20 C 0.029 3.971 21 C -0.116 4.116 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.269 0.731 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 6.897 -10.167 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.142 3.858 4 H 0.064 0.936 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.255 6.255 14 C 0.307 3.693 15 O -0.405 6.405 16 C -0.131 4.131 17 C -0.173 4.173 18 C 0.003 3.997 19 O -0.293 6.293 20 C -0.067 4.067 21 C -0.154 4.154 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.791 6.861 -9.539 17.369 hybrid contribution -0.305 -0.649 0.546 0.902 sum -13.096 6.211 -8.992 17.057 Atomic orbital electron populations 1.21895 0.96984 0.99952 1.01811 1.22356 0.94358 0.99645 1.02170 1.20966 0.96292 0.88080 0.80499 0.93637 1.20807 0.87790 1.39813 1.07837 0.89530 1.24733 0.94938 0.95278 0.97370 1.69839 1.08496 1.44409 1.29810 0.86997 0.81041 0.80109 0.81281 1.19937 1.21680 1.18509 1.86506 1.34475 1.62202 1.42267 1.23037 0.80496 0.76453 0.89363 1.90597 1.55716 1.58460 1.35770 1.22152 0.98311 0.96333 0.96276 1.23420 0.97389 0.93001 1.03507 1.23707 0.95073 0.83071 0.97820 1.87989 1.88562 1.18887 1.33821 1.22791 1.00069 0.92225 0.91662 1.23197 0.95073 0.94104 1.02985 0.93557 0.93972 0.92554 0.91837 0.91262 0.92083 0.86050 0.88439 0.89900 0.89050 0.94125 0.89788 0.93937 0.90296 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.57 37.16 0.32 -2.65 16 2 C -0.15 -3.38 5.15 -26.73 -0.14 -3.52 16 3 C 0.20 4.96 1.84 -27.89 -0.05 4.90 16 4 H 0.05 1.23 6.21 -51.92 -0.32 0.91 16 5 C -0.52 -15.15 9.48 -34.44 -0.33 -15.47 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 21.81 24.41 -169.99 -4.15 17.66 16 10 H -0.27 -6.50 6.83 56.52 0.39 -6.11 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 O -0.34 -7.76 9.81 -39.27 -0.39 -8.14 16 14 C 0.46 9.13 5.94 36.00 0.21 9.34 16 15 O -0.52 -11.24 13.04 -18.75 -0.24 -11.49 16 16 C -0.11 -1.58 4.26 -90.96 -0.39 -1.96 16 17 C -0.14 -1.76 7.46 -25.92 -0.19 -1.95 16 18 C 0.06 0.68 4.31 -25.92 -0.11 0.57 16 19 O -0.37 -4.61 10.71 -35.23 -0.38 -4.98 16 20 C 0.03 0.24 10.85 101.05 1.10 1.34 16 21 C -0.12 -1.46 7.24 -25.92 -0.19 -1.65 16 22 H 0.05 0.89 6.06 -51.93 -0.31 0.57 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.17 7.80 -51.93 -0.40 0.76 16 25 H 0.06 1.50 3.22 -51.93 -0.17 1.33 16 26 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.59 7.43 -51.93 -0.39 1.20 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -32.17 291.12 -5.27 -37.44 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.41 Total: 0.05 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.14 Total: -8.84 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.01 Total: -24.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.66 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.17 -5.27 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860695982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.719 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds