Wall clock time and date at job start Mon Mar 30 2020 18:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31510 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00029 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47190 * 90.00302 * 9 7 5 11 11 H 1.48498 * 109.47233 * 210.00871 * 9 7 5 12 12 H 1.48503 * 109.46978 * 330.00665 * 9 7 5 13 13 O 1.45200 * 109.47292 * 295.00145 * 3 2 1 14 14 C 1.34236 * 117.00099 * 89.99460 * 13 3 2 15 15 O 1.20826 * 119.99519 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00297 * 179.97438 * 14 13 3 17 17 C 1.53777 * 113.62018 * 277.50432 * 16 14 13 18 18 C 1.53777 * 87.08269 * 220.01688 * 17 16 14 19 19 O 1.42901 * 113.61591 * 139.97967 * 18 17 16 20 20 C 1.42900 * 114.00046 * 112.50103 * 19 18 17 21 21 C 1.53777 * 87.08374 * 25.43199 * 18 17 16 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 0.97005 * 119.99902 * 179.97438 * 8 7 5 28 28 H 1.09006 * 112.84972 * 48.81018 * 16 14 13 29 29 H 1.09000 * 113.61051 * 334.56717 * 17 16 14 30 30 H 1.09003 * 113.61658 * 105.46881 * 17 16 14 31 31 H 1.09000 * 113.61599 * 270.88555 * 18 17 16 32 32 H 1.09003 * 109.47201 * 60.00692 * 20 19 18 33 33 H 1.09000 * 109.46988 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.47178 * 300.00018 * 20 19 18 35 35 H 1.09004 * 113.61682 * 220.02052 * 21 18 17 36 36 H 1.09000 * 113.61969 * 89.11356 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8797 1.3357 9 14 3.0965 0.1099 2.5705 10 1 2.8748 -1.3262 2.2643 11 1 3.7942 0.2359 3.8753 12 1 1.7881 0.8090 2.6393 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0073 3.4226 -2.5083 17 6 0.5958 4.8324 -2.6835 18 6 -0.7917 5.2637 -3.1868 19 8 -1.1962 6.5514 -2.7174 20 6 -1.2813 7.5434 -3.7424 21 6 -1.3659 4.0994 -2.3626 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 5.8771 0.4818 2.1126 28 1 0.0941 2.7981 -3.3975 29 1 0.8859 5.3042 -1.7447 30 1 1.3737 4.8893 -3.4450 31 1 -0.9229 5.1438 -4.2622 32 1 -2.0094 7.2308 -4.4910 33 1 -1.5945 8.4916 -3.3054 34 1 -0.3056 7.6644 -4.2129 35 1 -2.1719 3.5644 -2.8651 36 1 -1.6122 4.3707 -1.3361 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860695982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:17 Heat of formation + Delta-G solvation = -134.790052 kcal Electronic energy + Delta-G solvation = -17979.857743 eV Core-core repulsion = 15043.354225 eV Total energy + Delta-G solvation = -2936.503518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81945 -40.02268 -37.85995 -36.68141 -35.51501 -33.92789 -29.92280 -28.31945 -26.80395 -26.70948 -24.75294 -23.09397 -21.71129 -20.54841 -19.37420 -18.55660 -18.06998 -17.35274 -17.01984 -16.53439 -16.03602 -15.93609 -15.32457 -15.02527 -14.73934 -14.13444 -13.91355 -13.61483 -13.54743 -13.20587 -13.14843 -13.08581 -12.73791 -12.58503 -12.17355 -12.04635 -11.87179 -11.74130 -11.55230 -11.52459 -11.18507 -11.07637 -10.74845 -10.43635 -8.46612 -6.54970 1.20690 1.28911 1.29049 1.38636 1.93889 2.17740 2.85548 2.96810 3.35945 3.49446 3.73026 3.84443 3.99648 4.09046 4.16715 4.30033 4.36056 4.56630 4.57436 4.63238 4.70747 4.74360 4.90041 4.91903 4.93582 4.95659 5.00497 5.03638 5.20649 5.31948 5.35324 5.69299 6.15645 6.34220 6.48880 6.92697 7.11062 8.69407 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037984 B = 0.005705 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.967398 B = 4906.934384 C = 5267.184127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.199 3.801 4 H 0.025 0.975 5 C -0.541 4.541 6 H 0.046 0.954 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.937 3.063 10 H -0.248 1.248 11 H -0.283 1.283 12 H -0.259 1.259 13 O -0.353 6.353 14 C 0.456 3.544 15 O -0.540 6.540 16 C -0.109 4.109 17 C -0.143 4.143 18 C 0.077 3.923 19 O -0.404 6.404 20 C 0.022 3.978 21 C -0.116 4.116 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.275 0.725 28 H 0.157 0.843 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 6.364 -11.444 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.145 3.855 4 H 0.043 0.957 5 C -0.579 4.579 6 H 0.064 0.936 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.763 3.237 10 H -0.173 1.173 11 H -0.210 1.210 12 H -0.183 1.183 13 O -0.269 6.269 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.127 4.127 17 C -0.181 4.181 18 C 0.020 3.980 19 O -0.323 6.323 20 C -0.074 4.074 21 C -0.153 4.153 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.994 6.340 -10.838 19.557 hybrid contribution 0.419 -0.349 0.879 1.034 sum -14.575 5.991 -9.959 18.641 Atomic orbital electron populations 1.21808 0.94439 1.02052 1.01442 1.22258 0.96579 0.97317 1.02170 1.20638 0.93899 0.89890 0.81118 0.95703 1.21001 0.89792 1.39844 1.07228 0.93573 1.25546 0.96071 0.95563 0.99614 1.69957 1.10330 1.45505 1.31001 0.86015 0.79188 0.80369 0.78173 1.17347 1.20956 1.18323 1.86501 1.36581 1.62947 1.40872 1.24212 0.79024 0.75546 0.91107 1.90578 1.56039 1.59174 1.37289 1.22457 0.99338 0.96530 0.94424 1.23479 0.99602 0.92199 1.02803 1.23694 0.92594 0.82353 0.99395 1.87956 1.88518 1.19842 1.36006 1.23017 1.01255 0.91701 0.91441 1.23196 0.95029 0.95042 1.02054 0.93154 0.90556 0.93741 0.92375 0.90667 0.91528 0.82592 0.91549 0.88037 0.85069 0.92088 0.89095 0.93083 0.87379 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.57 71.98 0.62 -4.66 16 2 C -0.15 -6.50 5.15 30.59 0.16 -6.35 16 3 C 0.20 10.25 1.84 29.85 0.05 10.30 16 4 H 0.03 1.38 6.21 -2.38 -0.01 1.37 16 5 C -0.54 -32.35 9.48 25.60 0.24 -32.11 16 6 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 7 C 0.03 1.88 5.45 84.66 0.46 2.34 16 8 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 9 Si 0.94 44.97 24.41 68.60 1.67 46.64 16 10 H -0.25 -10.92 6.83 99.48 0.68 -10.24 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -12.27 6.53 99.48 0.65 -11.62 16 13 O -0.35 -16.37 9.81 -51.47 -0.50 -16.88 16 14 C 0.46 17.91 5.94 71.23 0.42 18.33 16 15 O -0.54 -23.73 13.04 21.96 0.29 -23.44 16 16 C -0.11 -2.88 4.26 -11.02 -0.05 -2.92 16 17 C -0.14 -3.54 7.46 31.12 0.23 -3.31 16 18 C 0.08 1.51 4.31 31.12 0.13 1.64 16 19 O -0.40 -9.21 10.71 -148.98 -1.60 -10.81 16 20 C 0.02 0.31 10.85 113.37 1.23 1.54 16 21 C -0.12 -2.67 7.24 31.12 0.23 -2.45 16 22 H 0.05 1.83 6.06 -2.39 -0.01 1.81 16 23 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.04 1.76 7.80 -2.39 -0.02 1.75 16 25 H 0.06 2.64 3.22 -2.39 -0.01 2.63 16 26 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 28 H 0.16 3.06 8.14 -2.38 -0.02 3.04 16 29 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.13 1.56 7.87 -2.39 -0.02 1.54 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.25 7.43 -2.39 -0.02 2.23 16 Total: -1.00 -72.45 291.12 4.86 -67.58 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.97 Total: 11.80 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 3.73 Total: -17.65 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -1.81 Total: -51.13 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Total: -72.45 4.86 -67.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860695982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.209 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds