Wall clock time and date at job start Mon Mar 30 2020 18:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47232 * 240.00643 * 3 2 1 5 5 H 1.48501 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46656 * 120.00626 * 3 2 1 7 7 C 1.37880 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47054 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00182 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99923 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00286 * 179.97438 * 12 11 10 15 15 H 1.09002 * 109.39808 * 320.00294 * 14 12 11 16 16 C 1.53137 * 109.32241 * 79.77952 * 14 12 11 17 17 C 1.53476 * 108.36217 * 168.06818 * 16 14 12 18 18 O 1.45432 * 108.11071 * 298.26859 * 17 16 14 19 19 C 1.34210 * 117.18248 * 46.44577 * 18 17 16 20 20 O 1.21509 * 118.45657 * 163.22980 * 19 18 17 21 21 N 1.33728 * 123.07624 * 343.20056 * 19 18 17 22 22 H 0.97005 * 119.99693 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47505 * 60.00362 * 9 7 2 24 24 H 1.09005 * 109.47446 * 299.99806 * 9 7 2 25 25 H 1.08999 * 109.46919 * 59.99697 * 10 9 7 26 26 H 1.09002 * 109.47084 * 300.00083 * 10 9 7 27 27 H 0.96999 * 119.99983 * 0.02562 * 11 10 9 28 28 H 1.09003 * 109.68172 * 287.78871 * 16 14 12 29 29 H 1.08993 * 109.68589 * 48.34808 * 16 14 12 30 30 H 1.09003 * 109.73610 * 178.61140 * 17 16 14 31 31 H 1.09005 * 109.77327 * 57.94853 * 17 16 14 32 32 H 0.97005 * 118.51658 * 182.26977 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0980 -0.0003 13 8 3.3993 -6.0981 -0.0007 14 6 1.4329 -7.4031 0.0009 15 1 0.5706 -7.3226 0.6627 16 6 0.9559 -7.7142 -1.4207 17 6 0.4625 -9.1669 -1.4581 18 8 1.5829 -10.0336 -1.1285 19 6 2.3323 -9.6908 -0.0692 20 8 3.0651 -10.5291 0.4172 21 7 2.3107 -8.4697 0.4755 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.5427 -4.9308 0.0000 28 1 0.1408 -7.0423 -1.6896 29 1 1.7818 -7.5887 -2.1208 30 1 0.0941 -9.4050 -2.4560 31 1 -0.3359 -9.3041 -0.7287 32 1 2.9046 -8.2840 1.2197 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:21 Heat of formation + Delta-G solvation = -126.531561 kcal Electronic energy + Delta-G solvation = -17078.155634 eV Core-core repulsion = 14038.469888 eV Total energy + Delta-G solvation = -3039.685746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33230 -39.40721 -37.31301 -35.67525 -34.99904 -33.02477 -31.88266 -29.93764 -27.40692 -24.80704 -24.19860 -21.32067 -20.72352 -20.29979 -18.55022 -17.89719 -17.40553 -16.49770 -16.10629 -15.47287 -15.21026 -14.87387 -14.78407 -14.55761 -14.19320 -13.64261 -13.15455 -12.66874 -12.38722 -12.33590 -11.90428 -11.34159 -11.10994 -10.98879 -10.75136 -10.73396 -10.47096 -10.12262 -9.76049 -9.48494 -9.23460 -8.76015 -8.49347 -6.18754 -4.22169 2.32287 2.50936 2.65639 3.14102 3.25304 3.29649 3.31959 3.40034 4.07654 4.24727 4.34694 4.46383 4.63770 4.81020 4.89917 5.08524 5.18705 5.47043 5.64786 6.14291 6.17424 6.54217 6.57577 6.65206 7.36150 7.41081 7.47271 7.69104 7.78767 7.93803 8.14261 8.31507 8.83276 9.43464 10.92651 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.060639 B = 0.003999 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.640557 B = 6999.402539 C = 7293.632084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.713 5.713 12 C 0.496 3.504 13 O -0.533 6.533 14 C 0.116 3.884 15 H 0.105 0.895 16 C -0.167 4.167 17 C 0.063 3.937 18 O -0.343 6.343 19 C 0.663 3.337 20 O -0.535 6.535 21 N -0.709 5.709 22 H 0.263 0.737 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.400 0.600 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -13.834 -2.022 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.363 5.363 12 C 0.279 3.721 13 O -0.410 6.410 14 C 0.007 3.993 15 H 0.123 0.877 16 C -0.205 4.205 17 C -0.012 4.012 18 O -0.255 6.255 19 C 0.416 3.584 20 O -0.420 6.420 21 N -0.377 5.377 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.234 0.766 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.282 -14.379 -2.148 14.904 hybrid contribution 0.005 1.445 0.288 1.474 sum -3.277 -12.933 -1.860 13.471 Atomic orbital electron populations 1.69936 1.06102 1.27123 1.50082 1.24984 0.94899 0.99442 0.94812 0.86562 0.79537 0.82556 0.78845 1.20070 1.21184 1.20068 1.20991 0.93231 0.90336 1.51820 0.92277 1.19324 0.94137 0.91032 0.97916 1.21822 0.96161 0.81089 1.01108 1.46318 1.10676 1.06369 1.72941 1.20442 0.88441 0.85315 0.77942 1.90749 1.13549 1.87297 1.49422 1.21112 0.93550 0.87077 0.97600 0.87691 1.22545 1.04480 0.98138 0.95380 1.23511 0.86330 0.87566 1.03748 1.86717 1.41821 1.51798 1.45147 1.17743 0.80260 0.82102 0.78334 1.91040 1.42339 1.49182 1.59400 1.45102 1.44724 1.09650 1.38256 0.92701 0.95867 0.95860 0.92250 0.92284 0.76647 0.86766 0.88678 0.86144 0.89938 0.73616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -13.86 9.11 -34.44 -0.31 -14.18 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.29 5.61 -4.04 -0.02 2.27 16 11 N -0.71 -10.21 5.56 -60.29 -0.33 -10.54 16 12 C 0.50 6.94 6.98 -10.99 -0.08 6.86 16 13 O -0.53 -9.86 16.40 5.55 0.09 -9.77 16 14 C 0.12 1.12 3.54 -69.25 -0.24 0.87 16 15 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.17 -1.23 5.56 -26.41 -0.15 -1.38 16 17 C 0.06 0.41 7.20 37.40 0.27 0.68 16 18 O -0.34 -4.08 10.50 -39.27 -0.41 -4.49 16 19 C 0.66 9.26 8.55 53.59 0.46 9.72 16 20 O -0.53 -9.53 17.95 -19.41 -0.35 -9.88 16 21 N -0.71 -8.43 4.85 -60.48 -0.29 -8.72 16 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.40 4.56 8.47 -40.82 -0.35 4.22 16 28 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.42 5.20 8.52 -40.82 -0.35 4.85 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -33.88 282.77 -5.67 -39.56 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.04 Total: 1.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.32 Total: 6.55 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.11 Total: -43.55 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.67 Total: -24.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.88 -5.67 -39.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.976 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds