Wall clock time and date at job start Mon Mar 30 2020 18:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47462 * 2 1 4 4 C 1.50700 * 109.47148 * 120.00686 * 2 1 3 5 5 O 1.21204 * 120.00318 * 119.99815 * 4 2 1 6 6 O 1.34318 * 119.99590 * 299.99517 * 4 2 1 7 7 C 1.34914 * 116.99862 * 180.02562 * 6 4 2 8 8 H 1.08005 * 119.99980 * 359.97438 * 7 6 4 9 9 C 1.38749 * 120.00417 * 179.97438 * 7 6 4 10 10 N 1.31449 * 119.99465 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00610 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47487 * 179.97438 * 11 9 7 13 13 H 1.48497 * 109.46870 * 300.00136 * 11 9 7 14 14 H 1.48508 * 109.46883 * 59.99946 * 11 9 7 15 15 C 1.53001 * 109.46564 * 240.00095 * 2 1 3 16 16 H 1.09000 * 109.48238 * 60.02761 * 15 2 1 17 17 C 1.53094 * 109.47721 * 180.02562 * 15 2 1 18 18 C 1.53186 * 109.16445 * 177.59488 * 17 15 2 19 19 C 1.53181 * 109.03098 * 303.01936 * 18 17 15 20 20 C 1.53092 * 109.16420 * 56.98182 * 19 18 17 21 21 O 1.42898 * 109.41463 * 302.38792 * 20 19 18 22 22 H 1.08999 * 109.46814 * 299.99707 * 1 2 3 23 23 H 1.08999 * 109.46935 * 59.99508 * 1 2 3 24 24 H 1.09005 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47606 * 180.02562 * 3 2 1 26 26 H 1.09009 * 109.47009 * 300.00495 * 3 2 1 27 27 H 1.09006 * 109.47192 * 59.99731 * 3 2 1 28 28 H 0.97001 * 119.99860 * 359.97438 * 10 9 7 29 29 H 1.09004 * 109.52553 * 297.49700 * 17 15 2 30 30 H 1.08996 * 109.52393 * 57.69072 * 17 15 2 31 31 H 1.08996 * 109.54587 * 183.15139 * 18 17 15 32 32 H 1.08996 * 109.61615 * 62.92461 * 18 17 15 33 33 H 1.08997 * 109.52032 * 297.06936 * 19 18 17 34 34 H 1.09000 * 109.51579 * 176.88704 * 19 18 17 35 35 H 1.09001 * 109.48130 * 182.40641 * 20 19 18 36 36 H 1.08992 * 109.49461 * 62.37735 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 1.2304 5 8 2.7292 -1.6960 1.1191 6 8 1.7080 -0.2517 2.4503 7 6 2.1907 -0.9336 3.5096 8 1 2.8078 -1.8064 3.3543 9 6 1.8947 -0.5139 4.7985 10 7 1.1433 0.5480 4.9875 11 14 2.5625 -1.4585 6.2651 12 1 2.1060 -0.8106 7.5208 13 1 2.0662 -2.8574 6.2205 14 1 4.0469 -1.4582 6.2199 15 6 2.0399 -0.7213 -1.2493 16 1 1.6771 -0.2072 -2.1394 17 6 3.5709 -0.7220 -1.2492 18 6 4.0734 -1.4974 -2.4710 19 6 3.4914 -2.9140 -2.4376 20 6 1.9635 -2.8286 -2.3918 21 8 1.5643 -2.0688 -1.2492 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 0.7962 1.0383 4.2259 29 1 3.9357 0.3042 -1.2939 30 1 3.9349 -1.1997 -0.3397 31 1 5.1619 -1.5498 -2.4473 32 1 3.7524 -0.9928 -3.3822 33 1 3.8539 -3.4359 -1.5520 34 1 3.7993 -3.4553 -3.3321 35 1 1.5452 -3.8328 -2.3248 36 1 1.5991 -2.3427 -3.2968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869715757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:27 Heat of formation + Delta-G solvation = -146.705804 kcal Electronic energy + Delta-G solvation = -18845.261620 eV Core-core repulsion = 15908.241397 eV Total energy + Delta-G solvation = -2937.020223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05952 -38.39457 -35.58973 -34.49223 -33.37068 -31.96926 -29.86530 -27.04074 -25.00573 -24.71287 -23.44755 -22.29826 -20.09444 -19.13574 -17.74756 -16.54155 -15.93840 -15.49203 -14.74945 -14.55403 -14.34762 -14.19244 -13.75853 -13.49900 -13.22240 -12.93504 -12.52612 -12.23327 -11.80721 -11.60262 -11.31575 -11.15446 -10.97425 -10.93858 -10.72879 -10.72267 -10.29018 -10.19406 -10.09649 -9.94151 -9.61093 -9.09469 -8.60784 -8.41730 -6.64065 -3.99818 3.31170 3.33877 3.56157 3.63898 4.02327 4.08205 4.54060 4.83175 5.01354 5.07734 5.19364 5.25548 5.29297 5.41390 5.46768 5.54907 5.62871 5.76146 5.82442 5.89971 5.95616 6.05587 6.10292 6.18211 6.21684 6.26219 6.35971 6.46723 6.65651 6.74712 6.91878 7.60233 7.74629 8.53937 8.66247 9.18586 9.91148 10.81198 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.007169 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.483452 B = 3904.602765 C = 4266.816660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 C -0.139 4.139 4 C 0.417 3.583 5 O -0.530 6.530 6 O -0.239 6.239 7 C -0.459 4.459 8 H 0.084 0.916 9 C 0.011 3.989 10 N -0.887 5.887 11 Si 1.097 2.903 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.120 3.880 16 H 0.056 0.944 17 C -0.169 4.169 18 C -0.116 4.116 19 C -0.154 4.154 20 C 0.064 3.936 21 O -0.359 6.359 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.279 0.721 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -0.820 -14.031 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 C -0.196 4.196 4 C 0.262 3.738 5 O -0.425 6.425 6 O -0.147 6.147 7 C -0.535 4.535 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.522 5.522 11 Si 0.921 3.079 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.063 3.937 16 H 0.074 0.926 17 C -0.206 4.206 18 C -0.153 4.153 19 C -0.192 4.192 20 C -0.013 4.013 21 O -0.278 6.278 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.804 -1.173 -12.197 12.386 hybrid contribution 0.215 0.039 -2.075 2.086 sum 2.019 -1.135 -14.272 14.459 Atomic orbital electron populations 1.21754 0.92308 1.02995 1.02119 1.20330 0.97607 0.95436 0.90859 1.21867 1.01579 0.93295 1.02905 1.22650 0.81532 0.84576 0.85025 1.90482 1.38355 1.26933 1.86754 1.83598 1.64858 1.52687 1.13592 1.22044 1.34645 1.12951 0.83905 0.89818 1.26504 0.96488 0.97979 0.98344 1.70560 1.29967 1.16245 1.35433 0.83101 0.75915 0.74800 0.74063 1.19984 1.20847 1.20887 1.21776 0.93422 0.83289 0.95250 0.92617 1.22593 0.96126 1.00784 1.01124 1.21521 1.00293 0.95648 0.97853 1.22155 0.96984 0.97648 1.02430 1.22453 0.94017 0.96225 0.88580 1.88050 1.73745 1.22951 1.43020 0.91332 0.92407 0.91627 0.92001 0.91997 0.90657 0.91126 0.91663 0.87545 0.91939 0.92724 0.90612 0.91746 0.89405 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.26 37.16 0.31 -2.04 16 2 C -0.04 -0.78 0.58 -155.66 -0.09 -0.87 16 3 C -0.14 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.42 10.48 6.05 36.01 0.22 10.70 16 5 O -0.53 -14.44 12.20 -25.33 -0.31 -14.75 16 6 O -0.24 -6.85 8.95 -20.70 -0.19 -7.04 16 7 C -0.46 -13.97 9.64 30.92 0.30 -13.68 16 8 H 0.08 2.61 6.86 -52.48 -0.36 2.25 16 9 C 0.01 0.33 5.49 -17.53 -0.10 0.23 16 10 N -0.89 -26.92 13.69 55.48 0.76 -26.16 16 11 Si 1.10 25.30 29.92 -169.99 -5.09 20.22 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.12 2.05 1.80 -26.68 -0.05 2.00 16 16 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.17 -2.79 4.69 -26.59 -0.12 -2.91 16 18 C -0.12 -1.54 6.03 -26.54 -0.16 -1.70 16 19 C -0.15 -2.07 6.14 -26.59 -0.16 -2.24 16 20 C 0.06 0.91 6.84 37.20 0.25 1.16 16 21 O -0.36 -6.66 8.63 -53.50 -0.46 -7.12 16 22 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 25 H 0.06 0.99 6.49 -51.94 -0.34 0.65 16 26 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 28 H 0.28 8.51 7.97 -40.82 -0.33 8.19 16 29 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 30 H 0.11 2.19 5.47 -51.93 -0.28 1.91 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -33.82 288.83 -5.72 -39.55 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.49 Total: 2.27 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 0.69 Total: -11.31 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.76 Total: -26.16 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.96 Total: -28.91 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.82 -5.72 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869715757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.158 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds