Wall clock time and date at job start Mon Mar 30 2020 18:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 110.45864 * 2 1 4 4 C 1.54478 * 110.50908 * 237.24601 * 2 1 3 5 5 O 1.44521 * 104.88041 * 265.25979 * 4 2 1 6 6 C 1.44426 * 105.22510 * 319.64252 * 5 4 2 7 7 H 1.09000 * 110.37755 * 281.47634 * 6 5 4 8 8 C 1.52997 * 110.37226 * 159.24543 * 6 5 4 9 9 C 1.52998 * 109.47000 * 67.95630 * 8 6 5 10 10 C 1.50695 * 109.47449 * 180.02562 * 9 8 6 11 11 O 1.21209 * 119.99895 * 359.97438 * 10 9 8 12 12 O 1.34314 * 120.00503 * 180.02562 * 10 9 8 13 13 C 1.34916 * 117.00261 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00095 * 359.97438 * 13 12 10 15 15 C 1.38755 * 120.00017 * 179.97438 * 13 12 10 16 16 N 1.31442 * 120.00067 * 359.72773 * 15 13 12 17 17 Si 1.86800 * 120.00352 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46765 * 60.00278 * 17 15 13 19 19 H 1.48495 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47013 * 300.00768 * 17 15 13 21 21 C 1.54484 * 104.89883 * 40.36295 * 6 5 4 22 22 H 1.09002 * 109.46851 * 297.39184 * 1 2 3 23 23 H 1.08994 * 109.46880 * 57.39369 * 1 2 3 24 24 H 1.09003 * 109.46645 * 177.39590 * 1 2 3 25 25 H 1.08992 * 109.47153 * 182.60769 * 3 2 1 26 26 H 1.09002 * 109.46752 * 302.61084 * 3 2 1 27 27 H 1.09007 * 109.46944 * 62.60225 * 3 2 1 28 28 H 1.09003 * 110.37395 * 24.16609 * 4 2 1 29 29 H 1.09004 * 110.37290 * 146.39008 * 4 2 1 30 30 H 1.08994 * 109.47173 * 307.95504 * 8 6 5 31 31 H 1.08996 * 109.47174 * 187.95099 * 8 6 5 32 32 H 1.08999 * 109.47299 * 59.99457 * 9 8 6 33 33 H 1.09003 * 109.47260 * 300.00089 * 9 8 6 34 34 H 0.97000 * 120.00405 * 180.02562 * 16 15 13 35 35 H 1.08996 * 110.51143 * 94.71589 * 21 6 5 36 36 H 1.08997 * 110.51035 * 217.42999 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0649 1.4335 0.0000 4 6 2.0713 -0.7828 -1.2168 5 8 2.3094 -2.1196 -0.7220 6 6 2.8758 -1.9415 0.5945 7 1 3.9305 -1.6764 0.5213 8 6 2.7041 -3.2150 1.4249 9 6 3.5756 -4.3275 0.8386 10 6 3.4061 -5.5820 1.6561 11 8 2.6624 -5.5859 2.6131 12 8 4.0799 -6.6957 1.3248 13 6 3.8833 -7.7835 2.0982 14 1 3.2088 -7.7327 2.9402 15 6 4.5476 -8.9676 1.8120 16 7 5.3644 -9.0310 0.7841 17 14 4.2759 -10.4736 2.8832 18 1 2.8400 -10.8511 2.8514 19 1 5.0960 -11.6003 2.3704 20 1 4.6760 -10.1662 4.2799 21 6 2.0715 -0.7798 1.2191 22 1 -0.3633 0.4728 0.9125 23 1 -0.3633 0.5537 -0.8657 24 1 -0.3633 -1.0267 -0.0467 25 1 3.1536 1.4151 -0.0468 26 1 1.6729 1.9674 -0.8657 27 1 1.7488 1.9392 0.9125 28 1 1.3311 -0.8000 -2.0168 29 1 3.0013 -0.3381 -1.5710 30 1 1.6590 -3.5235 1.4051 31 1 3.0063 -3.0211 2.4541 32 1 4.6208 -4.0189 0.8584 33 1 3.2735 -4.5213 -0.1906 34 1 5.8285 -9.8588 0.5837 35 1 1.2491 -1.1653 1.8217 36 1 2.7220 -0.1448 1.8204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884663676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:47 Heat of formation + Delta-G solvation = -172.305795 kcal Electronic energy + Delta-G solvation = -17423.611256 eV Core-core repulsion = 14485.480934 eV Total energy + Delta-G solvation = -2938.130322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.17031 -40.71081 -37.44575 -35.69142 -34.46812 -34.27730 -30.50288 -28.20685 -27.71751 -26.83388 -25.43962 -22.31553 -21.47178 -20.21655 -19.88609 -18.47974 -17.35274 -16.84981 -16.65398 -16.29428 -16.18047 -16.10864 -14.89689 -14.61277 -14.51646 -14.17403 -13.95694 -13.77307 -13.57987 -13.07946 -13.00050 -12.66081 -12.37885 -12.35528 -12.21358 -12.14850 -12.08783 -11.99588 -11.58506 -11.52203 -11.42030 -11.01434 -10.70663 -10.58454 -8.54493 -6.35291 1.31779 1.33154 1.49814 1.65143 2.12079 2.76541 2.96359 2.98000 3.54402 3.72063 3.92704 3.95602 4.10518 4.19319 4.29677 4.41140 4.52384 4.62205 4.70198 4.76329 4.81920 4.84826 4.87857 4.96310 5.04104 5.07655 5.11177 5.18572 5.21330 5.29031 5.33554 5.43848 5.82712 5.97567 6.66123 6.90088 7.76932 8.66359 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.063520 B = 0.003993 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.700481 B = 7010.185328 C = 7181.195843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.133 4.133 4 C 0.045 3.955 5 O -0.396 6.396 6 C 0.078 3.922 7 H 0.085 0.915 8 C -0.088 4.088 9 C -0.090 4.090 10 C 0.393 3.607 11 O -0.584 6.584 12 O -0.249 6.249 13 C -0.426 4.426 14 H 0.081 0.919 15 C -0.006 4.006 16 N -0.904 5.904 17 Si 1.019 2.981 18 H -0.262 1.262 19 H -0.258 1.258 20 H -0.260 1.260 21 C -0.141 4.141 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.279 0.721 35 H 0.070 0.930 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 19.629 -2.700 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.032 4.032 5 O -0.316 6.316 6 C 0.021 3.979 7 H 0.103 0.897 8 C -0.126 4.126 9 C -0.128 4.128 10 C 0.242 3.758 11 O -0.483 6.483 12 O -0.157 6.157 13 C -0.502 4.502 14 H 0.099 0.901 15 C -0.206 4.206 16 N -0.542 5.542 17 Si 0.838 3.162 18 H -0.187 1.187 19 H -0.182 1.182 20 H -0.185 1.185 21 C -0.179 4.179 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.171 19.275 -2.692 20.138 hybrid contribution -0.100 -0.763 0.467 0.900 sum -5.271 18.512 -2.225 19.376 Atomic orbital electron populations 1.21843 0.93331 1.01461 1.02693 1.21957 0.96871 0.96780 0.94207 1.21813 1.01107 0.93223 1.02888 1.23752 1.00774 0.81970 0.96665 1.89180 1.83453 1.27637 1.31358 1.23051 0.98101 0.94022 0.82720 0.89732 1.21368 0.99647 0.92440 0.99151 1.21200 1.03790 0.88500 0.99305 1.24610 0.79136 0.86949 0.85113 1.90496 1.40215 1.85896 1.31646 1.83913 1.59764 1.19205 1.52819 1.21415 1.29424 0.87919 1.11440 0.90120 1.26589 0.94337 1.01232 0.98395 1.70076 1.27028 1.29270 1.27789 0.84670 0.79221 0.74832 0.77514 1.18666 1.18218 1.18455 1.23147 1.00376 0.96257 0.98104 0.91759 0.91238 0.93886 0.91971 0.91385 0.91595 0.88679 0.91059 0.92378 0.89813 0.86979 0.88208 0.91144 0.91077 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.29 71.99 0.60 -1.58 16 2 C -0.10 -1.61 1.06 -51.16 -0.05 -1.67 16 3 C -0.13 -1.55 8.31 71.98 0.60 -0.95 16 4 C 0.04 0.87 6.74 72.48 0.49 1.36 16 5 O -0.40 -11.04 11.07 -148.98 -1.65 -12.69 16 6 C 0.08 1.95 3.26 31.10 0.10 2.05 16 7 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.09 -2.84 4.14 30.59 0.13 -2.72 16 9 C -0.09 -3.46 5.74 29.85 0.17 -3.29 16 10 C 0.39 20.77 7.91 71.23 0.56 21.33 16 11 O -0.58 -33.23 15.22 20.78 0.32 -32.91 16 12 O -0.25 -15.37 9.75 14.89 0.15 -15.23 16 13 C -0.43 -26.94 9.65 67.94 0.66 -26.29 16 14 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 15 C -0.01 -0.32 5.49 84.87 0.47 0.14 16 16 N -0.90 -55.07 13.67 21.62 0.30 -54.78 16 17 Si 1.02 44.60 29.55 68.60 2.03 46.63 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 C -0.14 -2.75 5.92 31.61 0.19 -2.57 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 28 H 0.10 1.67 7.87 -2.39 -0.02 1.65 16 29 H 0.07 1.18 7.83 -2.38 -0.02 1.17 16 30 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 32 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.10 3.78 7.96 -2.39 -0.02 3.76 16 34 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 1.51 7.46 -2.39 -0.02 1.50 16 36 H 0.10 1.50 7.73 -2.39 -0.02 1.49 16 Total: -1.00 -75.28 302.37 6.08 -69.20 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.04 Total: 13.95 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.90 Total: -14.18 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.30 Total: -54.78 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -1.19 Total: -60.82 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.28 6.08 -69.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884663676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.109 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds