Wall clock time and date at job start Mon Mar 30 2020 18:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46089 * 118.73244 * 2 1 4 4 C 1.53018 * 109.92629 * 198.34001 * 3 2 1 5 5 O 1.43262 * 108.65834 * 310.82223 * 4 3 2 6 6 C 1.42959 * 112.98361 * 68.37711 * 5 4 3 7 7 H 1.08998 * 109.36218 * 70.47574 * 6 5 4 8 8 C 1.50701 * 109.41264 * 190.30524 * 6 5 4 9 9 O 1.21275 * 120.00279 * 5.33994 * 8 6 5 10 10 N 1.34776 * 119.99973 * 185.34548 * 8 6 5 11 11 C 1.46500 * 120.00325 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47517 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 C 1.33879 * 118.72880 * 179.97438 * 2 1 3 21 21 O 1.21278 * 118.83312 * 358.14210 * 20 2 1 22 22 H 1.09003 * 109.47488 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47305 * 300.01969 * 1 2 3 24 24 H 1.09002 * 109.47264 * 60.02205 * 1 2 3 25 25 H 1.09006 * 109.39306 * 318.47752 * 3 2 1 26 26 H 1.08997 * 109.39386 * 78.28741 * 3 2 1 27 27 H 1.08999 * 109.60763 * 70.59287 * 4 3 2 28 28 H 1.09001 * 109.60268 * 190.92037 * 4 3 2 29 29 H 0.97006 * 120.00171 * 0.02562 * 10 8 6 30 30 H 1.09005 * 109.46643 * 60.00620 * 11 10 8 31 31 H 1.08998 * 109.47481 * 300.00454 * 11 10 8 32 32 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1672 1.2810 0.0000 4 6 3.6153 1.0819 -0.4527 5 8 4.1831 -0.0026 0.2916 6 6 3.6084 -1.2688 -0.0404 7 1 3.9260 -1.5583 -1.0421 8 6 4.0719 -2.3047 0.9511 9 8 4.7405 -1.9728 1.9069 10 7 3.7434 -3.5999 0.7756 11 6 4.1944 -4.6071 1.7392 12 6 3.6973 -5.9653 1.3161 13 1 3.1049 -6.0682 0.4189 14 6 3.9985 -7.0768 2.0743 15 7 4.7203 -6.9516 3.1666 16 14 3.3816 -8.7603 1.5503 17 1 3.8389 -9.7811 2.5269 18 1 1.8975 -8.7506 1.5019 19 1 3.9186 -9.0874 0.2050 20 6 2.1084 -1.1740 0.0005 21 8 1.4584 -2.1973 0.0354 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5141 0.8898 24 1 -0.3634 0.5135 -0.8902 25 1 1.6662 1.9685 -0.6816 26 1 2.1582 1.6987 1.0067 27 1 3.6368 0.8465 -1.5167 28 1 4.1847 1.9928 -0.2681 29 1 3.2090 -3.8655 0.0109 30 1 3.8005 -4.3671 2.7268 31 1 5.2838 -4.6142 1.7744 32 1 4.9320 -7.7335 3.7002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907803996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:34 Heat of formation + Delta-G solvation = -132.156671 kcal Electronic energy + Delta-G solvation = -17717.047087 eV Core-core repulsion = 14677.117418 eV Total energy + Delta-G solvation = -3039.929669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17168 -40.15901 -38.89483 -36.50845 -36.19799 -34.39837 -31.68073 -30.51745 -29.05618 -26.99399 -24.79364 -24.61003 -21.88557 -20.40671 -19.43786 -18.99279 -18.04622 -17.83988 -17.16564 -16.73359 -16.59013 -16.15944 -15.70589 -15.39832 -15.17382 -14.69761 -14.28201 -14.07698 -13.90245 -13.60774 -13.37575 -13.09218 -12.96936 -12.69486 -12.36243 -12.24598 -11.80156 -11.54125 -10.91801 -10.81409 -10.59831 -9.92869 -9.88087 -8.30464 -6.47323 1.00762 1.36620 1.41983 1.47110 1.55234 1.86332 1.97773 2.38758 2.90337 3.03755 3.14062 3.61553 3.73647 3.85981 4.14904 4.30738 4.43399 4.58616 4.68466 4.82627 4.91888 5.01798 5.18038 5.21121 5.40169 5.57109 5.72754 5.80375 6.09009 6.59982 6.71623 6.80197 7.16923 7.31287 8.81811 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038530 B = 0.005675 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.540417 B = 4932.754871 C = 5427.160080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.073 3.927 4 C 0.030 3.970 5 O -0.368 6.368 6 C 0.073 3.927 7 H 0.149 0.851 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.687 5.687 11 C 0.268 3.732 12 C -0.559 4.559 13 H 0.079 0.921 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.988 3.012 17 H -0.281 1.281 18 H -0.266 1.266 19 H -0.260 1.260 20 C 0.490 3.510 21 O -0.558 6.558 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.134 0.866 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.409 0.591 30 H -0.014 1.014 31 H -0.002 1.002 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 18.294 -12.580 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C -0.049 4.049 4 C -0.046 4.046 5 O -0.287 6.287 6 C 0.009 3.991 7 H 0.166 0.834 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.337 5.337 11 C 0.145 3.855 12 C -0.596 4.596 13 H 0.097 0.903 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.810 3.190 17 H -0.206 1.206 18 H -0.191 1.191 19 H -0.184 1.184 20 C 0.276 3.724 21 O -0.437 6.437 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.152 0.848 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.169 0.831 29 H 0.246 0.754 30 H 0.004 0.996 31 H 0.016 0.984 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.384 17.945 -11.592 22.603 hybrid contribution -0.399 -0.978 -0.064 1.058 sum -7.783 16.967 -11.656 22.007 Atomic orbital electron populations 1.21960 0.77374 1.04022 1.03790 1.47484 1.08718 1.05860 1.71563 1.22535 0.93450 0.84206 1.04672 1.23573 0.93124 0.91016 0.96876 1.88344 1.61282 1.13749 1.65278 1.22003 0.89746 0.86825 1.00571 0.83374 1.20234 0.80522 0.83789 0.86192 1.90657 1.41180 1.81281 1.32829 1.46129 1.52524 1.06054 1.29008 1.18636 0.93546 0.86148 0.87129 1.21531 1.35195 0.91561 1.11362 0.90286 1.26071 0.94602 1.04338 0.94379 1.70130 1.38345 1.32219 1.16095 0.85167 0.78844 0.76490 0.78466 1.20572 1.19056 1.18398 1.20452 0.90233 0.84660 0.77101 1.90770 1.67213 1.35002 1.50760 0.91534 0.90558 0.88361 0.84777 0.90336 0.89331 0.83055 0.75439 0.99606 0.98376 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 10.58 127.77 1.35 2.56 16 2 N -0.60 -13.16 3.23 -849.59 -2.75 -15.91 16 3 C 0.07 0.93 6.69 86.46 0.58 1.51 16 4 C 0.03 0.42 6.90 71.99 0.50 0.92 16 5 O -0.37 -10.66 10.03 -129.97 -1.30 -11.97 16 6 C 0.07 2.35 3.31 28.99 0.10 2.44 16 7 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 8 C 0.51 23.39 7.06 87.66 0.62 24.01 16 9 O -0.58 -31.83 16.50 15.99 0.26 -31.57 16 10 N -0.69 -33.41 5.08 -466.80 -2.37 -35.78 16 11 C 0.27 15.87 5.43 85.63 0.46 16.34 16 12 C -0.56 -32.60 9.28 25.60 0.24 -32.37 16 13 H 0.08 4.27 7.60 -2.91 -0.02 4.25 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 16 Si 0.99 44.26 29.54 68.60 2.03 46.29 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 C 0.49 15.32 7.13 87.69 0.62 15.95 16 21 O -0.56 -21.56 14.37 -3.02 -0.04 -21.61 16 22 H 0.07 1.56 6.71 -2.39 -0.02 1.54 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.13 0.54 8.13 -2.38 -0.02 0.52 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 28 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.41 17.88 7.40 -92.70 -0.69 17.20 16 30 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 31 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -83.99 278.41 1.49 -82.50 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.45 Total: 13.52 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 4.93 Total: 32.16 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.83 Total: -109.32 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -1.08 Total: -65.14 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -83.99 1.49 -82.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.659 kcal (2) G-P(sol) polarization free energy of solvation -83.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds