Wall clock time and date at job start Mon Mar 30 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47075 * 179.97438 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 O 1.42900 * 110.01422 * 33.61273 * 15 13 12 17 17 C 1.54267 * 110.03522 * 272.16864 * 15 13 12 18 18 C 1.54888 * 104.19491 * 217.10563 * 17 15 13 19 19 C 1.54886 * 102.74817 * 37.94225 * 18 17 15 20 20 C 1.53881 * 110.02930 * 155.00161 * 15 13 12 21 21 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 0.96700 * 114.00443 * 300.69884 * 16 15 13 29 29 H 1.09004 * 110.48280 * 335.78666 * 17 15 13 30 30 H 1.09000 * 110.48199 * 98.42716 * 17 15 13 31 31 H 1.08998 * 110.75412 * 279.62945 * 18 17 15 32 32 H 1.08999 * 110.90873 * 156.33310 * 18 17 15 33 33 H 1.09003 * 110.48631 * 203.37561 * 19 18 17 34 34 H 1.09003 * 110.48683 * 80.73747 * 19 18 17 35 35 H 1.08997 * 110.03113 * 238.57023 * 20 15 13 36 36 H 1.08993 * 110.03376 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4240 -6.0907 0.0006 13 6 1.9109 -7.3310 0.0016 14 8 0.7131 -7.4894 0.0024 15 6 2.8290 -8.5262 0.0004 16 8 4.0148 -8.2327 0.7419 17 6 3.1923 -8.9122 -1.4483 18 6 3.2375 -10.4603 -1.4290 19 6 2.0645 -10.8247 -0.4854 20 6 2.1119 -9.7422 0.6127 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6042 -0.8894 26 1 0.8534 -5.0451 -0.8886 27 1 0.8541 -5.0445 0.8914 28 1 4.5177 -7.4815 0.3985 29 1 2.4263 -8.5614 -2.1400 30 1 4.1668 -8.5054 -1.7185 31 1 4.1848 -10.8140 -1.0220 32 1 3.0715 -10.8668 -2.4266 33 1 2.2159 -11.8137 -0.0529 34 1 1.1164 -10.7829 -1.0216 35 1 2.6688 -10.1091 1.4748 36 1 1.0998 -9.4681 0.9102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919133616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:09 Heat of formation + Delta-G solvation = -186.291480 kcal Electronic energy + Delta-G solvation = -17368.594342 eV Core-core repulsion = 14429.857555 eV Total energy + Delta-G solvation = -2938.736787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.02973 -39.50170 -37.88757 -36.12871 -35.79695 -33.70157 -29.89647 -29.85000 -28.75113 -25.53271 -23.60506 -22.22326 -21.99345 -20.82961 -19.51047 -18.69505 -17.95117 -17.75906 -17.01327 -16.55546 -16.44099 -15.66631 -15.37735 -14.66866 -14.32134 -14.09830 -13.94860 -13.77679 -13.59554 -13.03577 -12.86722 -12.67277 -12.52622 -12.39048 -12.19054 -12.11406 -12.08339 -11.83731 -11.59670 -11.49539 -11.44735 -11.28848 -10.93932 -10.59764 -8.23473 -6.35255 0.92753 1.40556 1.41339 1.46406 1.55569 2.40294 3.07512 3.10616 3.23631 3.39793 3.59879 3.93424 3.99474 4.17318 4.31485 4.34850 4.35720 4.43745 4.65017 4.75218 4.75939 4.82864 4.96066 5.01346 5.04003 5.14569 5.18850 5.32344 5.40265 5.47238 5.60269 5.77908 6.16530 6.42341 6.62881 6.80894 7.34616 8.89036 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.058605 B = 0.003797 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.662699 B = 7371.741513 C = 7571.217493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.076 3.924 12 O -0.353 6.353 13 C 0.432 3.568 14 O -0.533 6.533 15 C 0.149 3.851 16 O -0.545 6.545 17 C -0.144 4.144 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.115 4.115 21 H 0.265 0.735 22 H -0.003 1.003 23 H -0.005 1.005 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.400 0.600 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 -20.881 -2.461 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.130 4.130 11 C 0.003 3.997 12 O -0.269 6.269 13 C 0.275 3.725 14 O -0.422 6.422 15 C 0.106 3.894 16 O -0.354 6.354 17 C -0.181 4.181 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.153 4.153 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.252 0.748 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.123 -21.270 -2.105 22.865 hybrid contribution -0.338 1.832 -0.176 1.871 sum 7.785 -19.438 -2.281 21.063 Atomic orbital electron populations 1.70110 1.07929 1.27904 1.51502 1.26032 0.95796 1.03606 0.94563 0.85318 0.79144 0.78356 0.77743 1.18254 1.20360 1.20458 1.21649 0.93796 0.91774 1.50801 0.91534 1.18949 0.94310 0.92607 0.95413 1.21452 0.98702 0.90089 1.02730 1.23173 0.91068 0.83825 1.01659 1.86453 1.42133 1.15358 1.82963 1.25576 0.89770 0.85789 0.71351 1.90633 1.18335 1.86825 1.46446 1.22046 0.83608 0.88243 0.95470 1.86559 1.35921 1.55679 1.57257 1.23096 1.03566 0.99426 0.92036 1.22486 0.99283 0.92343 1.00889 1.22399 0.99338 0.98350 0.95649 1.22285 1.00088 0.92377 1.00520 0.92669 0.98481 0.98653 0.91402 0.91110 0.91871 0.92299 0.74847 0.91101 0.87846 0.89575 0.89145 0.88757 0.91363 0.88747 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.29 4.97 29.84 0.15 1.44 16 10 C -0.09 -3.80 5.53 30.59 0.17 -3.63 16 11 C 0.08 2.86 5.47 71.98 0.39 3.25 16 12 O -0.35 -11.49 9.66 -46.53 -0.45 -11.94 16 13 C 0.43 13.31 6.72 71.24 0.48 13.78 16 14 O -0.53 -19.52 15.31 21.97 0.34 -19.18 16 15 C 0.15 3.34 1.30 -10.81 -0.01 3.32 16 16 O -0.55 -11.47 12.82 -135.93 -1.74 -13.21 16 17 C -0.14 -2.42 6.08 31.67 0.19 -2.23 16 18 C -0.11 -1.41 6.91 31.88 0.22 -1.19 16 19 C -0.12 -1.75 6.83 31.67 0.22 -1.53 16 20 C -0.12 -2.36 6.14 31.32 0.19 -2.16 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 27 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 28 H 0.40 6.32 8.65 -74.06 -0.64 5.68 16 29 H 0.07 1.33 7.85 -2.38 -0.02 1.32 16 30 H 0.10 1.39 8.06 -2.39 -0.02 1.37 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.78 7.95 -2.39 -0.02 1.76 16 36 H 0.07 1.77 6.71 -2.39 -0.02 1.75 16 Total: -1.00 -68.06 303.14 3.57 -64.50 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.42 Total: 9.59 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 2.69 Total: -19.01 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.86 Total: -44.33 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.06 3.57 -64.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919133616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.796 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds