Wall clock time and date at job start Mon Mar 30 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 119.99780 * 2 1 4 4 C 1.50691 * 109.47392 * 270.00410 * 3 2 1 5 5 H 1.07994 * 120.00440 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99722 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00348 * 359.97438 * 6 4 3 8 8 Si 1.86810 * 119.99692 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47094 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47041 * 120.00125 * 8 6 4 11 11 H 1.48501 * 109.47041 * 239.99990 * 8 6 4 12 12 C 1.34769 * 119.99884 * 180.02562 * 2 1 3 13 13 S 1.71205 * 120.00094 * 179.97438 * 12 2 1 14 14 N 1.34775 * 120.00454 * 359.97438 * 12 2 1 15 15 C 1.46504 * 120.00207 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.46983 * 179.97438 * 15 14 12 17 17 C 1.53786 * 113.61503 * 85.86203 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.46996 * 16 15 14 20 20 H 1.08998 * 109.46715 * 269.98873 * 1 2 3 21 21 H 1.08996 * 109.47299 * 29.99805 * 1 2 3 22 22 H 1.09008 * 109.46693 * 149.99899 * 1 2 3 23 23 H 1.09005 * 109.46949 * 30.00664 * 3 2 1 24 24 H 1.09000 * 109.47036 * 149.99868 * 3 2 1 25 25 H 0.97001 * 119.99702 * 179.97438 * 7 6 4 26 26 H 0.96999 * 120.00146 * 359.97438 * 14 12 2 27 27 H 1.09000 * 109.47232 * 59.99775 * 15 14 12 28 28 H 1.08997 * 109.47041 * 299.99591 * 15 14 12 29 29 H 1.09002 * 112.85017 * 314.66585 * 16 15 14 30 30 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 31 31 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 32 32 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 33 33 H 1.09003 * 113.61268 * 89.11946 * 18 17 16 34 34 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 35 35 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0973 1.0964 -2.2416 6 6 3.1268 2.8776 -1.6725 7 7 3.5541 3.6177 -0.6729 8 14 3.4387 3.4167 -3.4338 9 1 2.8605 2.4168 -4.3672 10 1 2.8016 4.7376 -3.6673 11 1 4.9013 3.5244 -3.6668 12 6 2.1389 -1.1671 -0.0005 13 16 3.8509 -1.1672 -0.0012 14 7 1.4651 -2.3344 -0.0005 15 6 2.1976 -3.6031 -0.0005 16 6 1.2034 -4.7661 0.0001 17 6 0.7252 -5.1686 -1.4050 18 6 0.8240 -6.6310 -0.9310 19 6 1.8721 -6.1482 0.0855 20 1 -0.3633 -0.0002 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8901 -0.5139 23 1 1.6084 2.0283 0.5140 24 1 3.1499 1.1384 0.5139 25 1 4.0316 4.4432 -0.8502 26 1 0.4951 -2.3345 0.0002 27 1 2.8243 -3.6608 0.8894 28 1 2.8242 -3.6609 -0.8905 29 1 0.3919 -4.6288 0.7148 30 1 -0.2924 -4.8482 -1.6284 31 1 1.4324 -4.9171 -2.1955 32 1 1.2261 -7.3082 -1.6846 33 1 -0.0912 -7.0036 -0.4709 34 1 2.8922 -6.1642 -0.2983 35 1 1.7810 -6.6176 1.0650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322377453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:35 Heat of formation + Delta-G solvation = 14.394417 kcal Electronic energy + Delta-G solvation = -15346.443240 eV Core-core repulsion = 12891.454469 eV Total energy + Delta-G solvation = -2454.988771 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60455 -39.44825 -36.42088 -34.59331 -30.34217 -29.64160 -27.85570 -26.47651 -25.14364 -23.68948 -22.61933 -20.33428 -18.92186 -18.72170 -18.19834 -16.72722 -16.50301 -16.06787 -15.80344 -15.29975 -15.13988 -14.93132 -14.12175 -13.59762 -13.32037 -13.28205 -13.13178 -12.91063 -12.81759 -12.61536 -12.25774 -12.19684 -12.02411 -11.59806 -11.48629 -11.23172 -11.08687 -10.60462 -9.70155 -8.81958 -8.35205 -8.18433 -6.29605 0.59872 1.14014 1.37289 1.42174 1.51299 1.80824 2.39920 2.54894 3.14347 3.65489 3.69036 3.81356 4.00106 4.03144 4.27439 4.42131 4.52763 4.62585 4.73900 4.81758 4.89539 4.90726 4.99839 5.10014 5.13304 5.20507 5.27106 5.35097 5.60562 5.64844 5.81716 5.96356 6.05754 6.53664 6.75308 7.36721 8.89498 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.005363 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.640057 B = 5219.687299 C = 5263.583468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.551 5.551 3 C 0.253 3.747 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.269 1.269 11 H -0.286 1.286 12 C 0.580 3.420 13 S -0.770 6.770 14 N -0.670 5.670 15 C 0.141 3.859 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.129 4.129 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.266 0.734 26 H 0.411 0.589 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -17.669 0.934 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.256 5.256 3 C 0.132 3.868 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.212 1.212 12 C 0.215 3.785 13 S -0.644 6.644 14 N -0.304 5.304 15 C 0.018 3.982 16 C -0.137 4.137 17 C -0.179 4.179 18 C -0.170 4.170 19 C -0.167 4.167 20 H 0.108 0.892 21 H 0.107 0.893 22 H 0.112 0.888 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.252 0.748 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.146 -17.489 0.982 21.316 hybrid contribution -0.474 0.797 -0.780 1.212 sum -12.620 -16.692 0.202 20.927 Atomic orbital electron populations 1.22311 0.77062 1.05191 1.04108 1.47515 1.08234 1.05179 1.64647 1.19361 0.92726 0.77219 0.97468 1.21374 1.36843 1.06036 0.92066 0.93371 1.25659 0.94893 0.96528 1.01327 1.70035 1.38919 1.14825 1.32644 0.85442 0.77723 0.78259 0.79775 1.19478 1.19378 1.21239 1.21488 0.93238 0.82782 0.81018 1.93327 0.96098 1.95488 1.79493 1.44912 1.09954 1.03266 1.72273 1.21670 0.94585 0.79354 1.02600 1.22898 0.98394 0.92949 0.99502 1.23076 1.01855 0.97280 0.95662 1.22834 0.99639 0.95849 0.98704 1.22872 0.99027 0.94026 1.00815 0.89224 0.89321 0.88843 0.94837 0.94508 0.92526 0.74753 0.91517 0.92091 0.86893 0.90429 0.91170 0.91021 0.88690 0.90395 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.48 10.20 127.77 1.30 2.79 16 2 N -0.55 -22.10 2.86 -739.21 -2.11 -24.21 16 3 C 0.25 13.21 4.92 85.63 0.42 13.63 16 4 C -0.52 -29.69 9.39 25.60 0.24 -29.45 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.02 0.88 5.46 84.66 0.46 1.34 16 7 N -0.92 -55.88 13.29 21.45 0.28 -55.60 16 8 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 C 0.58 23.46 7.70 179.06 1.38 24.83 16 13 S -0.77 -40.71 27.17 -56.49 -1.53 -42.24 16 14 N -0.67 -18.60 5.42 -350.16 -1.90 -20.50 16 15 C 0.14 3.60 4.95 86.38 0.43 4.03 16 16 C -0.12 -1.88 3.75 -10.26 -0.04 -1.92 16 17 C -0.14 -2.09 7.65 31.21 0.24 -1.86 16 18 C -0.13 -1.59 8.09 31.21 0.25 -1.33 16 19 C -0.13 -1.84 7.64 31.12 0.24 -1.60 16 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 22 H 0.09 1.73 6.36 -2.38 -0.02 1.71 16 23 H 0.03 1.76 8.07 -2.38 -0.02 1.74 16 24 H 0.04 2.25 6.58 -2.39 -0.02 2.23 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.41 8.06 6.20 -92.71 -0.58 7.48 16 27 H 0.07 1.94 7.99 -2.39 -0.02 1.92 16 28 H 0.06 1.86 7.73 -2.39 -0.02 1.84 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -76.98 301.34 2.18 -74.80 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.49 Total: 9.60 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.92 Total: 10.46 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.73 Total: -100.31 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: -40.71 SS G_CDS: -1.53 Total: -42.24 kcal Total: -76.98 2.18 -74.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322377453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.192 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds