Wall clock time and date at job start Mon Mar 30 2020 18:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47426 * 274.99203 * 3 2 1 5 5 H 1.48504 * 109.47196 * 34.99698 * 3 2 1 6 6 H 1.48502 * 109.46920 * 154.98890 * 3 2 1 7 7 C 1.40051 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99814 * 174.20957 * 7 2 1 9 9 C 1.46374 * 119.99746 * 354.20611 * 7 2 1 10 10 O 1.21689 * 120.00442 * 7.93795 * 9 7 2 11 11 N 1.34781 * 119.99922 * 187.94027 * 9 7 2 12 12 C 1.47168 * 120.98756 * 4.93218 * 11 9 7 13 13 C 1.53299 * 108.41382 * 230.53373 * 12 11 9 14 14 O 1.42962 * 109.21867 * 307.72080 * 13 12 11 15 15 C 1.42958 * 114.16980 * 62.58253 * 14 13 12 16 16 C 1.47146 * 120.98480 * 184.99448 * 11 9 7 17 17 H 1.08997 * 109.68449 * 249.20546 * 16 11 9 18 18 C 1.52996 * 109.68281 * 9.72467 * 16 11 9 19 19 C 1.50698 * 109.47235 * 281.12168 * 18 16 11 20 20 N 1.34779 * 120.00128 * 179.97438 * 19 18 16 21 21 O 1.21281 * 119.99985 * 359.97438 * 19 18 16 22 22 H 0.96999 * 120.00067 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.65445 * 110.81273 * 12 11 9 24 24 H 1.09003 * 109.71886 * 350.28888 * 12 11 9 25 25 H 1.08996 * 109.51649 * 187.79469 * 13 12 11 26 26 H 1.08998 * 109.55532 * 67.66566 * 13 12 11 27 27 H 1.08999 * 109.51552 * 177.49680 * 15 14 13 28 28 H 1.09000 * 109.51799 * 57.33806 * 15 14 13 29 29 H 1.09000 * 109.47788 * 161.11920 * 18 16 11 30 30 H 1.09004 * 109.47132 * 41.11766 * 18 16 11 31 31 H 0.96998 * 120.00207 * 179.97438 * 20 19 18 32 32 H 0.97000 * 119.99596 * 359.72841 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3827 2.1073 -1.3947 5 1 1.4950 2.6199 0.8030 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0828 -1.2153 -0.0949 9 6 1.2805 -2.4773 0.1269 10 8 0.0643 -2.4870 0.0880 11 7 1.9587 -3.6309 0.2873 12 6 3.4219 -3.6339 0.4453 13 6 4.0140 -4.6412 -0.5472 14 8 3.3557 -5.9003 -0.3890 15 6 1.9558 -5.8692 -0.6774 16 6 1.2583 -4.9248 0.3085 17 1 1.2982 -5.3475 1.3123 18 6 -0.2000 -4.7282 -0.1103 19 6 -0.9874 -4.1820 1.0527 20 7 -2.3038 -3.9277 0.9153 21 8 -0.4365 -3.9711 2.1124 22 1 -0.4850 0.8400 0.0004 23 1 3.6802 -3.9263 1.4630 24 1 3.8163 -2.6392 0.2378 25 1 5.0798 -4.7606 -0.3526 26 1 3.8680 -4.2794 -1.5650 27 1 1.5408 -6.8720 -0.5764 28 1 1.8015 -5.5113 -1.6954 29 1 -0.6221 -5.6851 -0.4174 30 1 -0.2475 -4.0263 -0.9429 31 1 -2.8107 -3.5765 1.6640 32 1 -2.7436 -4.0927 0.0666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626703761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:20 Heat of formation + Delta-G solvation = -98.582203 kcal Electronic energy + Delta-G solvation = -18748.338842 eV Core-core repulsion = 15709.865072 eV Total energy + Delta-G solvation = -3038.473771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63467 -37.92919 -36.57810 -33.51760 -32.72232 -32.51853 -31.95224 -28.10965 -26.33819 -25.88752 -22.72201 -21.42484 -19.83916 -18.74873 -16.77954 -16.56454 -16.04574 -15.63746 -15.47561 -15.00243 -14.70739 -14.26258 -14.05938 -13.59120 -13.28469 -12.53944 -12.41942 -11.87402 -11.66017 -11.39036 -11.19429 -11.06458 -10.82130 -10.57290 -10.30949 -10.25144 -10.01563 -9.50241 -8.86395 -8.84545 -8.62925 -7.33897 -7.14642 -6.22021 -4.68451 3.09560 3.17991 3.21145 3.91250 4.02251 4.17168 4.41633 4.52637 4.64426 5.35953 5.48794 5.55789 5.57863 5.68935 5.79783 5.87044 5.95315 6.08537 6.18614 6.28275 6.44803 6.58281 6.89248 7.39099 7.49222 7.50780 7.75409 8.08681 8.29740 8.35873 8.97526 9.37705 9.45407 10.50447 10.69016 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.011333 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.918377 B = 2470.083506 C = 3575.799488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.090 3.910 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.570 3.430 10 O -0.561 6.561 11 N -0.635 5.635 12 C 0.089 3.911 13 C 0.046 3.954 14 O -0.388 6.388 15 C 0.054 3.946 16 C 0.134 3.866 17 H 0.068 0.932 18 C -0.122 4.122 19 C 0.569 3.431 20 N -0.862 5.862 21 O -0.563 6.563 22 H 0.267 0.733 23 H 0.051 0.949 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.389 0.611 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -7.363 -3.223 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.378 3.622 10 O -0.446 6.446 11 N -0.373 5.373 12 C -0.036 4.036 13 C -0.032 4.032 14 O -0.307 6.307 15 C -0.024 4.024 16 C 0.028 3.972 17 H 0.086 0.914 18 C -0.162 4.162 19 C 0.358 3.642 20 N -0.424 5.424 21 O -0.443 6.443 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.217 0.783 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.316 -7.347 -2.594 7.902 hybrid contribution -0.040 1.285 -0.201 1.301 sum 1.276 -6.062 -2.795 6.796 Atomic orbital electron populations 1.69997 1.06981 1.27199 1.34851 1.25679 0.94617 1.00196 0.92509 0.86398 0.80419 0.81641 0.78576 1.19873 1.20430 1.18825 1.20926 0.93953 0.89431 1.53637 0.91060 1.18078 0.86685 0.81881 0.75595 1.90316 1.13970 1.84089 1.56231 1.48061 1.05315 1.05142 1.78787 1.22090 0.82923 1.00655 0.97889 1.23040 0.96479 0.84586 0.99051 1.87848 1.21057 1.31436 1.90315 1.23028 0.81734 0.99759 0.97918 1.21268 0.91065 0.86275 0.98554 0.91372 1.21822 0.93932 1.00125 1.00354 1.19606 0.81054 0.75272 0.88270 1.43579 1.10791 1.71352 1.16687 1.90624 1.68953 1.54370 1.30320 0.92219 0.93051 0.88128 0.88892 0.93022 0.88941 0.93107 0.92651 0.86486 0.78257 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.03 11.86 55.55 0.66 -21.37 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.90 19.91 29.56 -169.99 -5.03 14.88 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -14.92 8.85 -35.63 -0.32 -15.24 16 8 H 0.07 1.80 5.74 -52.49 -0.30 1.50 16 9 C 0.57 15.66 7.02 -12.99 -0.09 15.57 16 10 O -0.56 -16.18 8.66 -15.72 -0.14 -16.31 16 11 N -0.63 -14.67 3.02 -166.38 -0.50 -15.17 16 12 C 0.09 1.73 6.55 -3.52 -0.02 1.71 16 13 C 0.05 0.74 6.99 37.31 0.26 1.00 16 14 O -0.39 -6.70 10.74 -35.23 -0.38 -7.08 16 15 C 0.05 0.88 6.21 37.31 0.23 1.12 16 16 C 0.13 2.72 2.68 -67.42 -0.18 2.54 16 17 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 18 C -0.12 -2.40 4.75 -27.89 -0.13 -2.54 16 19 C 0.57 12.74 5.25 -10.99 -0.06 12.68 16 20 N -0.86 -15.62 8.87 31.22 0.28 -15.34 16 21 O -0.56 -15.21 15.74 -15.36 -0.24 -15.45 16 22 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.10 1.97 5.41 -51.93 -0.28 1.69 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.84 8.02 -51.93 -0.42 0.43 16 30 H 0.12 2.57 6.16 -51.93 -0.32 2.25 16 31 H 0.39 6.71 8.93 -40.82 -0.36 6.34 16 32 H 0.39 5.74 8.83 -40.82 -0.36 5.38 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -35.16 263.10 -5.46 -40.63 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -3.68 Total: 12.05 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: -0.40 Total: 19.20 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.43 Total: -51.88 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.76 Total: -38.84 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.16 -5.46 -40.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626703761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.955 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds