Wall clock time and date at job start Mon Mar 30 2020 17:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47402 * 2 1 4 4 H 1.09001 * 109.46633 * 55.00575 * 3 2 1 5 5 O 1.42899 * 109.47462 * 295.00846 * 3 2 1 6 6 C 1.42895 * 114.00481 * 89.99583 * 5 3 2 7 7 C 1.53514 * 114.17121 * 210.00069 * 6 5 3 8 8 N 1.47483 * 87.92777 * 220.32774 * 7 6 5 9 9 C 1.46903 * 110.99717 * 138.70421 * 8 7 6 10 10 C 1.50694 * 109.47066 * 169.99804 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47480 * 87.83900 * 27.00973 * 8 7 6 19 19 C 1.50701 * 109.47275 * 174.99861 * 3 2 1 20 20 N 1.34776 * 120.00236 * 300.00668 * 19 3 2 21 21 O 1.21284 * 119.99688 * 120.00193 * 19 3 2 22 22 H 1.09002 * 109.47311 * 59.99204 * 1 2 3 23 23 H 1.08998 * 109.47563 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47121 * 299.99753 * 1 2 3 25 25 H 1.09001 * 109.46553 * 240.00712 * 2 1 3 26 26 H 1.09002 * 109.47311 * 120.00796 * 2 1 3 27 27 H 1.09011 * 113.25486 * 342.95152 * 6 5 3 28 28 H 1.09000 * 113.47331 * 105.56452 * 7 6 5 29 29 H 1.08995 * 113.52785 * 335.10042 * 7 6 5 30 30 H 1.09007 * 109.47052 * 49.99488 * 9 8 7 31 31 H 1.09003 * 109.46808 * 290.00181 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.09004 * 113.47132 * 87.75237 * 18 8 7 34 34 H 1.09000 * 113.47538 * 218.21976 * 18 8 7 35 35 H 0.96999 * 120.00009 * 0.02562 * 20 19 3 36 36 H 0.96992 * 120.00190 * 179.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6619 2.0815 -1.2209 6 6 0.3927 2.7358 -1.1658 7 6 -0.3503 2.7804 -2.5084 8 7 -0.7544 4.1598 -2.1778 9 6 -0.6612 5.0323 -3.3560 10 6 -1.3076 6.3589 -3.0510 11 1 -1.7444 6.5362 -2.0793 12 6 -1.3423 7.3462 -4.0129 13 7 -0.8109 7.1303 -5.1964 14 14 -2.1442 8.9905 -3.6350 15 1 -2.0498 9.8726 -4.8260 16 1 -3.5722 8.7768 -3.2885 17 1 -1.4472 9.6295 -2.4899 18 6 0.4619 4.2582 -1.3497 19 6 3.5420 1.4442 0.1239 20 7 4.1298 0.8910 1.2031 21 8 4.2217 1.9435 -0.7477 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 -0.2222 2.4121 -0.3259 28 1 -1.1872 2.0844 -2.5648 29 1 0.3099 2.7169 -3.3733 30 1 -1.1729 4.5635 -4.1967 31 1 0.3871 5.1886 -3.6103 32 1 -0.8357 7.8247 -5.8731 33 1 1.3396 4.5891 -1.9050 34 1 0.3133 4.8147 -0.4243 35 1 3.5862 0.4913 1.9000 36 1 5.0965 0.8918 1.2826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206198185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:25 Heat of formation + Delta-G solvation = -50.502948 kcal Electronic energy + Delta-G solvation = -17673.068820 eV Core-core repulsion = 14772.513017 eV Total energy + Delta-G solvation = -2900.555803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17979 -39.16521 -36.79851 -34.16680 -32.94355 -32.60272 -29.34036 -27.47061 -25.37995 -24.80317 -22.52628 -21.56424 -20.71333 -19.43631 -18.00368 -17.16244 -16.50655 -16.11420 -15.43289 -15.19146 -14.50282 -14.44154 -14.19956 -14.08121 -13.44696 -12.93895 -12.45746 -12.19421 -12.07993 -12.01045 -11.85433 -11.34319 -11.13186 -10.98823 -10.77294 -10.56020 -10.14955 -9.91153 -9.88111 -9.68451 -9.21061 -9.11408 -8.39443 -7.89842 -5.99122 -4.00653 2.49038 3.00055 3.36732 3.40076 3.43397 3.96865 4.46420 4.55362 4.61668 4.74631 4.92565 4.99998 5.05281 5.20911 5.34502 5.36234 5.46879 5.68901 5.81020 5.91479 6.05775 6.12472 6.20497 6.37244 6.41222 6.56472 6.61923 7.04021 7.24909 7.39964 7.68298 7.88669 8.12241 8.13804 8.48343 9.05984 9.62948 11.12021 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038329 B = 0.004684 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.347597 B = 5976.341996 C = 6294.976404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C 0.071 3.929 4 H 0.088 0.912 5 O -0.341 6.341 6 C 0.046 3.954 7 C -0.001 4.001 8 N -0.463 5.463 9 C 0.161 3.839 10 C -0.506 4.506 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.288 1.288 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.006 4.006 19 C 0.516 3.484 20 N -0.857 5.857 21 O -0.517 6.517 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.006 0.994 32 H 0.262 0.738 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -15.742 14.663 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.178 4.178 3 C 0.008 3.992 4 H 0.106 0.894 5 O -0.258 6.258 6 C -0.012 4.012 7 C -0.130 4.130 8 N -0.187 5.187 9 C 0.035 3.965 10 C -0.545 4.545 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.728 3.272 15 H -0.213 1.213 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.136 4.136 19 C 0.300 3.700 20 N -0.423 5.423 21 O -0.390 6.390 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.125 -15.093 13.861 21.123 hybrid contribution 0.391 0.667 0.248 0.812 sum 5.516 -14.426 14.109 20.919 Atomic orbital electron populations 1.21930 0.94529 1.02452 1.02876 1.22021 0.97572 0.95060 1.03115 1.21961 0.91578 0.95094 0.90519 0.89381 1.88131 1.36642 1.70242 1.30763 1.24289 0.84025 0.93335 0.99597 1.24048 0.97741 0.95290 0.95956 1.68964 1.31140 1.01239 1.17395 1.20266 0.96491 0.92319 0.87430 1.21052 1.36741 0.97207 0.99450 0.91922 1.25011 0.95746 0.98961 0.94993 1.69955 1.45367 1.34218 1.04345 0.86522 0.79896 0.83207 0.77553 1.21332 1.20162 1.20273 1.24273 0.94795 0.94492 1.00031 1.20552 0.90448 0.77398 0.81605 1.43804 1.11433 1.63217 1.23871 1.90796 1.65303 1.43338 1.39564 0.91131 0.92119 0.92465 0.90419 0.90977 0.88259 0.90314 0.91108 0.95223 0.97591 0.92842 0.90837 0.90653 0.77208 0.76624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.66 37.16 0.32 -1.05 16 2 C -0.14 -1.20 5.58 -26.73 -0.15 -1.35 16 3 C 0.07 0.81 2.68 -27.88 -0.07 0.74 16 4 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 5 O -0.34 -5.53 9.50 -55.14 -0.52 -6.05 16 6 C 0.05 0.73 2.89 -26.20 -0.08 0.66 16 7 C 0.00 -0.02 7.38 -7.53 -0.06 -0.08 16 8 N -0.46 -10.43 6.32 -246.08 -1.55 -11.98 16 9 C 0.16 4.39 4.57 -4.98 -0.02 4.37 16 10 C -0.51 -14.84 9.39 -34.44 -0.32 -15.17 16 11 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 14 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C -0.01 -0.13 7.55 -7.54 -0.06 -0.19 16 19 C 0.52 6.46 7.50 -10.99 -0.08 6.38 16 20 N -0.86 -6.04 8.74 31.22 0.27 -5.77 16 21 O -0.52 -9.39 17.34 -14.35 -0.25 -9.64 16 22 H 0.07 0.74 5.98 -51.93 -0.31 0.43 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.40 7.43 -51.93 -0.39 0.01 16 27 H 0.10 1.33 6.15 -51.92 -0.32 1.02 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 30 H 0.03 0.85 8.08 -51.92 -0.42 0.43 16 31 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.07 1.62 7.42 -51.93 -0.39 1.24 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.40 1.43 8.19 -40.82 -0.33 1.09 16 36 H 0.40 2.45 8.93 -40.82 -0.36 2.08 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -35.70 299.52 -7.80 -43.50 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.36 Total: -0.76 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.62 Total: -4.20 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.55 Total: -44.57 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.77 Total: -15.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.70 -7.80 -43.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206198185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds