Wall clock time and date at job start Mon Mar 30 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.50703 * 109.46956 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00008 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99890 * 179.97438 * 4 3 2 7 7 C 1.46495 * 119.99803 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.78470 * 36.79251 * 7 6 4 9 9 C 1.54325 * 110.72250 * 273.54657 * 7 6 4 10 10 N 1.47018 * 107.40412 * 219.52320 * 9 7 6 11 11 C 1.36936 * 125.64899 * 178.89496 * 10 9 7 12 12 H 1.07997 * 119.99931 * 0.02562 * 11 10 9 13 13 C 1.38819 * 120.00094 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99956 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99883 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47048 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46969 * 120.00174 * 15 13 11 18 18 H 1.48497 * 109.47276 * 240.00208 * 15 13 11 19 19 C 1.47426 * 108.70517 * 358.86539 * 10 9 7 20 20 C 1.54914 * 104.82992 * 24.12623 * 19 10 9 21 21 H 1.09001 * 111.00161 * 204.91727 * 20 19 10 22 22 O 1.42894 * 111.00174 * 81.10645 * 20 19 10 23 23 H 1.08999 * 109.46567 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46829 * 299.99671 * 1 2 3 25 25 H 1.08993 * 109.47533 * 60.00089 * 1 2 3 26 26 H 1.08998 * 109.46829 * 240.00329 * 2 1 3 27 27 H 1.09000 * 109.47560 * 120.00313 * 2 1 3 28 28 H 1.08998 * 109.47063 * 60.00472 * 3 2 1 29 29 H 1.09000 * 109.47222 * 300.00520 * 3 2 1 30 30 H 0.96997 * 119.99763 * 0.02562 * 6 4 3 31 31 H 1.09002 * 109.88192 * 100.02760 * 9 7 6 32 32 H 1.09000 * 109.88128 * 339.01612 * 9 7 6 33 33 H 0.96998 * 120.00119 * 179.97438 * 14 13 11 34 34 H 1.08999 * 110.36956 * 142.96999 * 19 10 9 35 35 H 1.09003 * 110.36599 * 265.28903 * 19 10 9 36 36 H 0.96704 * 114.00274 * 61.45368 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6097 -0.0013 7 6 5.6858 2.6097 -0.0025 8 1 6.0721 1.7936 -0.6130 9 6 6.2331 2.5205 1.4378 10 7 7.4009 3.4098 1.5203 11 6 8.1585 3.6304 2.6395 12 1 7.9143 3.1290 3.5643 13 6 9.2409 4.4978 2.5850 14 7 9.5388 5.1085 1.4578 15 14 10.2748 4.7982 4.1115 16 1 9.7358 3.9972 5.2399 17 1 11.6791 4.3953 3.8454 18 1 10.2316 6.2404 4.4627 19 6 7.6217 4.0241 0.1985 20 6 6.2386 3.9751 -0.4976 21 1 6.3466 3.9834 -1.5822 22 8 5.4067 5.0514 -0.0602 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7359 3.4497 -0.0009 31 1 6.5313 1.4955 1.6582 32 1 5.4697 2.8445 2.1451 33 1 10.2949 5.7149 1.4198 34 1 7.9537 5.0563 0.3105 35 1 8.3529 3.4491 -0.3697 36 1 5.7603 5.9287 -0.2613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219101469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:40 Heat of formation + Delta-G solvation = -69.546910 kcal Electronic energy + Delta-G solvation = -17886.067257 eV Core-core repulsion = 14984.685645 eV Total energy + Delta-G solvation = -2901.381612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66237 -37.88128 -34.73155 -34.38929 -33.87036 -31.66796 -28.92704 -27.90873 -26.60123 -24.42053 -22.05154 -20.66288 -20.14766 -19.65126 -17.42278 -16.67034 -16.60624 -15.72640 -15.32601 -14.81943 -14.38048 -14.04546 -13.88108 -13.26243 -12.98269 -12.91440 -12.55586 -12.14056 -11.79931 -11.70737 -11.32256 -11.24843 -11.06276 -10.86534 -10.79804 -10.59581 -10.30566 -10.02097 -9.84469 -9.56576 -9.23620 -8.70488 -8.62850 -6.85099 -5.70079 -3.09649 2.90267 3.38750 3.43797 3.45869 3.48742 4.47613 4.61162 4.82750 4.94262 4.95577 5.32930 5.38000 5.41782 5.42993 5.49832 5.55957 5.67139 5.74196 5.91635 5.94599 6.08146 6.09198 6.25423 6.30979 6.60396 6.72828 6.98573 7.25995 7.56183 7.70965 7.89036 8.12706 8.30793 8.54906 9.17929 9.78853 10.42399 11.35302 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.041888 B = 0.005139 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.290564 B = 5446.901238 C = 5785.557396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.506 3.494 5 O -0.548 6.548 6 N -0.710 5.710 7 C 0.142 3.858 8 H 0.098 0.902 9 C 0.131 3.869 10 N -0.597 5.597 11 C -0.215 4.215 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.927 5.927 15 Si 0.917 3.083 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.126 3.874 20 C 0.067 3.933 21 H 0.058 0.942 22 O -0.563 6.563 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.407 0.593 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.251 0.749 34 H 0.115 0.885 35 H 0.022 0.978 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.298 -2.583 -5.737 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.292 3.708 5 O -0.426 6.426 6 N -0.361 5.361 7 C 0.037 3.963 8 H 0.116 0.884 9 C 0.004 3.996 10 N -0.324 5.324 11 C -0.344 4.344 12 H 0.097 0.903 13 C -0.208 4.208 14 N -0.577 5.577 15 Si 0.747 3.253 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.001 3.999 20 C 0.007 3.993 21 H 0.076 0.924 22 O -0.369 6.369 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.243 0.757 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.040 0.960 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.045 -3.723 -5.445 15.517 hybrid contribution 0.797 1.032 0.570 1.423 sum -13.249 -2.691 -4.875 14.371 Atomic orbital electron populations 1.21796 0.95738 1.01743 1.01681 1.21270 0.94947 0.94953 1.03557 1.21701 0.92222 0.99888 1.04190 1.20765 0.90198 0.83854 0.75967 1.90690 1.70528 1.31377 1.49966 1.45882 1.07212 1.08708 1.74306 1.22142 0.79171 0.96634 0.98394 0.88433 1.21591 0.90434 0.94177 0.93357 1.44313 1.30642 1.49626 1.07784 1.19164 1.05936 1.20927 0.88347 0.90345 1.24759 0.98750 0.99757 0.97532 1.69725 1.30277 1.33535 1.24158 0.85953 0.79936 0.77582 0.81788 1.20517 1.21748 1.21746 1.22622 0.89610 1.02812 0.84906 1.23620 0.93647 0.85918 0.96123 0.92411 1.86210 1.49017 1.16980 1.84687 0.92574 0.92723 0.92796 0.91337 0.91222 0.89045 0.89202 0.75742 0.95471 0.95335 0.93780 0.86718 0.95969 0.77208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.11 -1.18 5.22 -26.73 -0.14 -1.32 16 3 C -0.14 -1.52 5.70 -27.88 -0.16 -1.68 16 4 C 0.51 7.88 7.83 -10.98 -0.09 7.80 16 5 O -0.55 -10.67 15.71 5.55 0.09 -10.58 16 6 N -0.71 -11.24 5.09 -51.90 -0.26 -11.50 16 7 C 0.14 2.70 3.13 -65.96 -0.21 2.49 16 8 H 0.10 1.91 7.70 -51.93 -0.40 1.51 16 9 C 0.13 3.00 6.98 -3.07 -0.02 2.98 16 10 N -0.60 -15.60 3.39 -170.07 -0.58 -16.17 16 11 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 12 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 13 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 14 N -0.93 -26.54 10.09 55.49 0.56 -25.98 16 15 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 20 C 0.07 1.24 4.29 -24.44 -0.10 1.13 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 O -0.56 -9.60 12.23 -35.23 -0.43 -10.03 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.41 5.74 7.58 -40.82 -0.31 5.43 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.12 2.96 5.87 -51.93 -0.31 2.66 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 5.34 9.11 45.56 0.42 5.75 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -32.37 297.61 -6.56 -38.93 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.78 Total: 6.92 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.61 Total: 6.76 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.28 Total: -53.66 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.34 Total: -20.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.37 -6.56 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219101469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.617 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds