Wall clock time and date at job start Mon Mar 30 2020 17:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47698 * 2 1 4 4 H 1.09004 * 109.46571 * 304.99653 * 3 2 1 5 5 C 1.50701 * 109.47148 * 185.00030 * 3 2 1 6 6 H 1.08005 * 119.99590 * 239.99491 * 5 3 2 7 7 C 1.37878 * 120.00418 * 59.99572 * 5 3 2 8 8 N 1.31515 * 119.99606 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99990 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47307 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46802 * 120.00039 * 9 7 5 12 12 H 1.48497 * 109.47247 * 239.99806 * 9 7 5 13 13 N 1.46500 * 109.47445 * 64.99169 * 3 2 1 14 14 C 1.34766 * 120.00114 * 275.00566 * 13 3 2 15 15 O 1.21286 * 120.00325 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99840 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.37024 * 299.26815 * 16 14 13 18 18 C 1.54378 * 110.32203 * 61.45496 * 16 14 13 19 19 N 1.48560 * 104.69549 * 142.80950 * 18 16 14 20 20 C 1.48555 * 104.22165 * 320.45136 * 19 18 16 21 21 C 1.54377 * 104.59533 * 39.48960 * 20 19 18 22 22 H 1.09004 * 110.32506 * 217.14790 * 21 20 19 23 23 O 1.42903 * 110.32807 * 95.04035 * 21 20 19 24 24 H 1.09002 * 109.47159 * 300.01155 * 1 2 3 25 25 H 1.09004 * 109.46872 * 60.00406 * 1 2 3 26 26 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47159 * 239.98845 * 2 1 3 28 28 H 1.09004 * 109.46872 * 119.99594 * 2 1 3 29 29 H 0.97003 * 119.99619 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99495 * 95.00626 * 13 3 2 31 31 H 1.09002 * 110.41432 * 23.96867 * 18 16 14 32 32 H 1.09002 * 110.41130 * 261.64652 * 18 16 14 33 33 H 1.00892 * 111.00179 * 80.01344 * 19 18 16 34 34 H 1.09005 * 110.41154 * 158.26271 * 20 19 18 35 35 H 1.08998 * 110.41848 * 280.58433 * 20 19 18 36 36 H 0.96696 * 113.99798 * 61.44861 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8781 -1.2279 8 7 3.4063 0.3362 -2.1727 9 14 6.0051 0.8808 -1.3816 10 1 6.5989 1.5459 -0.1941 11 1 6.4971 -0.5180 -1.4627 12 1 6.3993 1.6161 -2.6101 13 7 1.6525 2.0976 1.2517 14 6 0.4353 2.6645 1.3667 15 8 -0.3391 2.6328 0.4338 16 6 0.0364 3.3380 2.6546 17 1 0.0498 2.6226 3.4768 18 6 0.9821 4.5201 2.9567 19 7 0.1050 5.5625 3.5494 20 6 -1.1451 5.4850 2.7505 21 6 -1.3655 3.9747 2.5185 22 1 -1.7671 3.7997 1.5203 23 8 -2.2492 3.4442 3.5082 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0616 -2.9497 30 1 2.2720 2.1233 1.9977 31 1 1.4394 4.8858 2.0373 32 1 1.7505 4.2198 3.6691 33 1 -0.0760 5.3717 4.5234 34 1 -1.9797 5.9096 3.3084 35 1 -1.0215 6.0035 1.7997 36 1 -3.1317 3.8393 3.4999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:16 Heat of formation + Delta-G solvation = -91.857923 kcal Electronic energy + Delta-G solvation = -18289.582120 eV Core-core repulsion = 15387.233031 eV Total energy + Delta-G solvation = -2902.349090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99193 -37.97028 -35.34194 -35.04131 -32.43572 -31.18489 -29.61740 -28.09271 -26.85314 -23.24939 -22.35615 -21.68314 -19.74810 -19.21785 -17.74635 -16.82637 -16.61137 -15.80769 -15.34549 -14.95791 -14.53129 -14.04181 -13.70277 -13.36268 -12.83357 -12.67473 -12.36727 -11.91197 -11.86346 -11.68799 -11.39135 -11.26566 -10.99240 -10.86881 -10.75142 -10.32424 -10.25941 -10.14075 -9.64192 -9.16300 -9.05614 -8.61347 -8.50971 -7.85517 -6.14073 -4.23529 3.22620 3.30433 3.32336 3.34190 3.80674 4.08233 4.30609 4.50579 4.61845 4.95035 5.00290 5.17538 5.25891 5.43450 5.65249 5.71258 5.80274 5.96088 6.04429 6.38222 6.44652 6.46015 6.64976 7.03111 7.17750 7.18821 7.34914 7.42721 7.57726 7.60416 7.71237 7.88010 8.16319 8.63449 8.75526 9.09161 9.43980 10.91335 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.006334 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.958878 B = 4419.426532 C = 4997.989276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.514 3.486 15 O -0.548 6.548 16 C -0.142 4.142 17 H 0.105 0.895 18 C 0.051 3.949 19 N -0.663 5.663 20 C 0.010 3.990 21 C 0.074 3.926 22 H 0.093 0.907 23 O -0.566 6.566 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.338 0.662 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 6.451 10.330 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.297 3.703 15 O -0.427 6.427 16 C -0.166 4.166 17 H 0.123 0.877 18 C -0.079 4.079 19 N -0.289 5.289 20 C -0.120 4.120 21 C 0.014 3.986 22 H 0.111 0.889 23 O -0.372 6.372 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.241 6.581 9.275 12.973 hybrid contribution 0.379 -0.678 0.426 0.886 sum -5.862 5.904 9.701 12.780 Atomic orbital electron populations 1.21838 0.98372 0.98064 1.01177 1.21940 0.92592 0.99843 1.02302 1.18808 0.94265 0.89175 0.80942 0.93291 1.21268 0.90671 1.38952 1.06298 0.91998 1.24891 0.98638 0.94786 0.95389 1.69908 1.35059 1.37655 1.09360 0.86401 0.84836 0.77781 0.78137 1.19721 1.20880 1.20870 1.46447 1.14399 1.55621 1.18594 1.19881 0.82884 0.79150 0.88345 1.90643 1.51373 1.60179 1.40511 1.22665 0.95082 0.99890 0.98926 0.87689 1.23040 0.95258 0.88291 1.01335 1.63290 1.12005 1.46974 1.06624 1.23762 0.92941 0.95574 0.99694 1.23230 0.89821 0.92243 0.93303 0.88916 1.86488 1.26172 1.66756 1.57794 0.94342 0.93180 0.95840 0.88251 0.95043 0.92607 0.77938 0.89197 0.89782 0.84667 0.90387 0.89263 0.77608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.97 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.25 4.96 -54.93 -0.27 -14.53 16 14 C 0.51 9.95 5.60 -10.99 -0.06 9.89 16 15 O -0.55 -12.47 12.41 5.55 0.07 -12.40 16 16 C -0.14 -2.11 3.27 -90.22 -0.29 -2.41 16 17 H 0.11 1.52 7.99 -51.93 -0.41 1.11 16 18 C 0.05 0.66 6.92 -2.18 -0.02 0.64 16 19 N -0.66 -7.77 7.62 -109.66 -0.84 -8.60 16 20 C 0.01 0.12 7.20 -2.19 -0.02 0.10 16 21 C 0.07 1.02 4.02 -25.18 -0.10 0.92 16 22 H 0.09 1.48 6.49 -51.93 -0.34 1.14 16 23 O -0.57 -7.08 13.28 -35.23 -0.47 -7.55 16 24 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.37 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.87 8.52 -40.82 -0.35 6.52 16 31 H 0.09 1.31 7.85 -51.93 -0.41 0.91 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.34 3.46 8.92 -39.30 -0.35 3.11 16 34 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.38 2.95 9.09 45.56 0.41 3.37 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -30.49 290.21 -6.89 -37.39 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -4.50 Total: 12.75 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.87 Total: -2.90 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.48 Total: -47.10 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.40 Total: -19.95 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.49 -6.89 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.472 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds