Wall clock time and date at job start Mon Mar 30 2020 17:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47698 * 2 1 4 4 H 1.09004 * 109.46571 * 304.99653 * 3 2 1 5 5 C 1.50701 * 109.47148 * 185.00030 * 3 2 1 6 6 H 1.08005 * 119.99590 * 239.99491 * 5 3 2 7 7 C 1.37878 * 120.00418 * 59.99572 * 5 3 2 8 8 N 1.31515 * 119.99606 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99990 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47307 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46802 * 120.00039 * 9 7 5 12 12 H 1.48497 * 109.47247 * 239.99806 * 9 7 5 13 13 N 1.46500 * 109.47445 * 64.99169 * 3 2 1 14 14 C 1.34766 * 120.00114 * 275.00566 * 13 3 2 15 15 O 1.21286 * 120.00325 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99840 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.37024 * 299.26815 * 16 14 13 18 18 C 1.54378 * 110.32203 * 61.45496 * 16 14 13 19 19 N 1.48560 * 104.69549 * 142.80950 * 18 16 14 20 20 C 1.48555 * 104.22165 * 320.45136 * 19 18 16 21 21 C 1.54377 * 104.59533 * 39.48960 * 20 19 18 22 22 H 1.09004 * 110.32506 * 217.14790 * 21 20 19 23 23 O 1.42903 * 110.32807 * 95.04035 * 21 20 19 24 24 H 1.09002 * 109.47159 * 300.01155 * 1 2 3 25 25 H 1.09004 * 109.46872 * 60.00406 * 1 2 3 26 26 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47159 * 239.98845 * 2 1 3 28 28 H 1.09004 * 109.46872 * 119.99594 * 2 1 3 29 29 H 0.97003 * 119.99619 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99495 * 95.00626 * 13 3 2 31 31 H 1.09002 * 110.41432 * 23.96867 * 18 16 14 32 32 H 1.09002 * 110.41130 * 261.64652 * 18 16 14 33 33 H 1.00892 * 111.00179 * 80.01344 * 19 18 16 34 34 H 1.09005 * 110.41154 * 158.26271 * 20 19 18 35 35 H 1.08998 * 110.41848 * 280.58433 * 20 19 18 36 36 H 0.96696 * 113.99798 * 61.44861 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8781 -1.2279 8 7 3.4063 0.3362 -2.1727 9 14 6.0051 0.8808 -1.3816 10 1 6.5989 1.5459 -0.1941 11 1 6.4971 -0.5180 -1.4627 12 1 6.3993 1.6161 -2.6101 13 7 1.6525 2.0976 1.2517 14 6 0.4353 2.6645 1.3667 15 8 -0.3391 2.6328 0.4338 16 6 0.0364 3.3380 2.6546 17 1 0.0498 2.6226 3.4768 18 6 0.9821 4.5201 2.9567 19 7 0.1050 5.5625 3.5494 20 6 -1.1451 5.4850 2.7505 21 6 -1.3655 3.9747 2.5185 22 1 -1.7671 3.7997 1.5203 23 8 -2.2492 3.4442 3.5082 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0616 -2.9497 30 1 2.2720 2.1233 1.9977 31 1 1.4394 4.8858 2.0373 32 1 1.7505 4.2198 3.6691 33 1 -0.0760 5.3717 4.5234 34 1 -1.9797 5.9096 3.3084 35 1 -1.0215 6.0035 1.7997 36 1 -3.1317 3.8393 3.4999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:16 Heat of formation + Delta-G solvation = -118.336175 kcal Electronic energy + Delta-G solvation = -18290.730303 eV Core-core repulsion = 15387.233031 eV Total energy + Delta-G solvation = -2903.497273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35924 -39.31632 -36.90147 -36.32534 -34.32063 -32.98235 -30.95037 -29.14155 -28.71561 -25.14504 -23.57926 -22.96944 -21.50597 -20.77859 -19.15370 -18.24765 -17.66953 -17.26894 -17.15473 -16.40116 -16.25975 -15.45449 -15.09560 -14.67462 -14.50710 -14.10671 -13.81624 -13.51909 -13.22954 -13.13587 -12.90921 -12.79057 -12.70065 -12.63900 -12.15492 -12.08295 -11.82938 -11.61777 -11.23427 -11.05336 -10.72577 -10.53317 -9.71348 -9.59936 -8.16728 -6.33895 1.44093 1.45567 1.57133 1.78870 2.31642 2.52456 3.11496 3.13145 3.34883 3.50692 3.90795 3.97021 4.15187 4.31607 4.45959 4.51960 4.53788 4.63194 4.73669 4.86295 4.91513 4.97180 5.04399 5.23185 5.41070 5.48479 5.54313 5.61802 5.77401 5.90885 6.15628 6.36850 6.74455 6.80758 6.95578 7.32936 7.54610 8.88990 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.006334 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.958878 B = 4419.426532 C = 4997.989276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.700 5.700 14 C 0.510 3.490 15 O -0.586 6.586 16 C -0.134 4.134 17 H 0.117 0.883 18 C 0.057 3.943 19 N -0.660 5.660 20 C 0.018 3.982 21 C 0.079 3.921 22 H 0.064 0.936 23 O -0.573 6.573 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.351 0.649 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 7.118 12.618 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.468 6.468 16 C -0.157 4.157 17 H 0.135 0.865 18 C -0.074 4.074 19 N -0.287 5.287 20 C -0.113 4.113 21 C 0.018 3.982 22 H 0.082 0.918 23 O -0.382 6.382 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.168 0.832 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.741 7.272 11.618 14.860 hybrid contribution 0.127 -0.867 -0.288 0.922 sum -5.614 6.405 11.330 14.175 Atomic orbital electron populations 1.21670 0.97119 0.99103 1.00108 1.21799 0.93614 0.99352 1.01327 1.18379 0.93739 0.89063 0.81372 0.98346 1.21609 0.91343 1.38765 1.06677 0.90892 1.25773 1.03302 0.94388 0.95050 1.70057 1.37018 1.38472 1.09926 0.85326 0.79153 0.77792 0.78241 1.18341 1.20536 1.21061 1.46199 1.15348 1.55653 1.17604 1.20667 0.81857 0.78278 0.89579 1.90632 1.52351 1.61330 1.42440 1.22634 0.96543 1.00502 0.96028 0.86523 1.22985 0.95549 0.87547 1.01275 1.63242 1.11871 1.46154 1.07432 1.23719 0.93907 0.93769 0.99856 1.23040 0.89246 0.93694 0.92260 0.91846 1.86435 1.27530 1.67316 1.56943 0.94055 0.95518 0.93621 0.90939 0.94075 0.92622 0.76174 0.91261 0.87295 0.83177 0.87318 0.90258 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.52 71.98 0.61 -5.01 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.70 -28.38 4.96 -446.09 -2.21 -30.60 16 14 C 0.51 19.85 5.60 87.66 0.49 20.34 16 15 O -0.59 -27.58 12.41 -3.05 -0.04 -27.61 16 16 C -0.13 -3.78 3.27 -10.53 -0.03 -3.82 16 17 H 0.12 3.08 7.99 -2.39 -0.02 3.06 16 18 C 0.06 1.35 6.92 86.45 0.60 1.95 16 19 N -0.66 -13.58 7.62 -500.87 -3.82 -17.40 16 20 C 0.02 0.36 7.20 86.45 0.62 0.98 16 21 C 0.08 2.04 4.02 31.60 0.13 2.16 16 22 H 0.06 2.05 6.49 -2.38 -0.02 2.03 16 23 O -0.57 -12.93 13.28 -148.98 -1.98 -14.91 16 24 H 0.04 1.84 5.65 -2.39 -0.01 1.82 16 25 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.40 13.82 8.52 -92.71 -0.79 13.03 16 31 H 0.07 1.96 7.85 -2.39 -0.02 1.94 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.35 5.87 8.92 -89.70 -0.80 5.07 16 34 H 0.11 1.57 8.06 -2.38 -0.02 1.55 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.40 5.15 9.09 -74.06 -0.67 4.48 16 Total: -1.00 -67.09 290.21 -3.57 -70.66 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -1.15 Total: 30.23 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 3.35 Total: -2.11 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -5.79 Total: -100.10 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.02 Total: -42.53 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.09 -3.57 -70.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.676 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds