Wall clock time and date at job start Mon Mar 30 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34228 * 117.00308 * 2 1 4 4 O 1.20833 * 119.99688 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00445 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47064 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46805 * 175.00465 * 6 5 3 8 8 C 1.53005 * 109.46805 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46872 * 299.99604 * 8 7 6 10 10 O 1.42903 * 109.46497 * 180.02562 * 9 8 7 11 11 C 1.34929 * 116.99828 * 150.00446 * 10 9 8 12 12 H 1.08009 * 119.99714 * 0.26611 * 11 10 9 13 13 C 1.38635 * 120.00101 * 179.97438 * 11 10 9 14 14 N 1.31581 * 119.99891 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00131 * 15 13 11 17 17 H 1.48495 * 109.47002 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47239 * 299.99851 * 15 13 11 19 19 C 1.52993 * 109.47022 * 60.00447 * 9 8 7 20 20 C 1.52995 * 109.47305 * 299.99493 * 19 9 8 21 21 H 1.08999 * 109.47498 * 59.99802 * 1 2 3 22 22 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47673 * 299.99706 * 1 2 3 24 24 H 1.09000 * 109.46916 * 60.00267 * 5 3 2 25 25 H 1.08997 * 109.47652 * 300.00179 * 5 3 2 26 26 H 1.08995 * 109.47280 * 55.00314 * 6 5 3 27 27 H 1.08995 * 109.47324 * 59.99876 * 7 6 5 28 28 H 1.08999 * 109.47049 * 299.99465 * 7 6 5 29 29 H 1.09005 * 109.46552 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47280 * 59.99849 * 8 7 6 31 31 H 1.09000 * 109.47019 * 299.99872 * 9 8 7 32 32 H 0.97000 * 119.99571 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47693 * 59.99838 * 19 9 8 34 34 H 1.09003 * 109.46729 * 179.97438 * 19 9 8 35 35 H 1.09003 * 109.47531 * 300.00769 * 20 19 9 36 36 H 1.08999 * 109.47627 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7421 0.0011 7 6 5.5226 2.8237 0.1273 8 6 5.9565 4.2910 0.1272 9 6 5.5169 4.9526 -1.1805 10 8 5.9227 6.3228 -1.1808 11 6 6.1972 6.8801 -2.3785 12 1 6.1019 6.2945 -3.2811 13 6 6.5959 8.2059 -2.4512 14 7 6.7060 8.9209 -1.3522 15 14 6.9767 8.9771 -4.1094 16 1 5.7693 8.9178 -4.9719 17 1 7.3771 10.3939 -3.9161 18 1 8.0858 8.2329 -4.7586 19 6 3.9944 4.8710 -1.3067 20 6 3.5605 3.4038 -1.3066 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.9563 0.7806 -0.8892 25 1 3.9557 0.7809 0.8907 26 1 3.5375 3.2574 0.8429 27 1 5.9851 2.3084 -0.7144 28 1 5.8358 2.3520 1.0587 29 1 7.0412 4.3490 0.2176 30 1 5.4940 4.8067 0.9687 31 1 5.9795 4.4368 -2.0220 32 1 6.9853 9.8484 -1.4030 33 1 3.5318 5.3867 -0.4652 34 1 3.6813 5.3427 -2.2381 35 1 4.0231 2.8880 -2.1481 36 1 2.4758 3.3456 -1.3969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:22 Heat of formation + Delta-G solvation = -145.546210 kcal Electronic energy + Delta-G solvation = -17689.647441 eV Core-core repulsion = 14752.677501 eV Total energy + Delta-G solvation = -2936.969940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66911 -38.44599 -36.63610 -35.47082 -32.20263 -31.01846 -30.26608 -28.27661 -26.20696 -24.24832 -22.22345 -21.67579 -20.23416 -19.38453 -17.65061 -17.36271 -16.63760 -16.53558 -15.60948 -14.61325 -14.19341 -13.97066 -13.89635 -13.61812 -13.33753 -12.68174 -12.53202 -12.25354 -12.04196 -11.89645 -11.64246 -11.24980 -11.01261 -10.94441 -10.75467 -10.59558 -10.53231 -10.37594 -10.23077 -10.16430 -9.58547 -9.19976 -8.92883 -7.87822 -5.87361 -3.49850 2.14164 2.60789 3.35779 3.37565 3.40726 4.36169 4.61627 4.79208 4.87313 4.90159 4.98195 5.18234 5.32529 5.33162 5.41026 5.48870 5.58648 5.77040 5.81933 5.97298 6.00539 6.03231 6.17475 6.25512 6.37780 6.47499 6.55085 6.70279 6.78455 6.93287 7.09230 7.17291 7.54067 7.68367 8.51084 9.56320 10.27698 11.33926 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047631 B = 0.004507 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.717364 B = 6211.017162 C = 6490.422880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.457 3.543 4 O -0.497 6.497 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.107 4.107 8 C -0.113 4.113 9 C 0.099 3.901 10 O -0.289 6.289 11 C -0.356 4.356 12 H 0.060 0.940 13 C 0.021 3.979 14 N -0.891 5.891 15 Si 0.922 3.078 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.134 4.134 20 C -0.117 4.117 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.257 0.743 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -18.683 2.729 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.300 3.700 4 O -0.384 6.384 5 C -0.147 4.147 6 C -0.096 4.096 7 C -0.144 4.144 8 C -0.151 4.151 9 C 0.039 3.961 10 O -0.203 6.203 11 C -0.435 4.435 12 H 0.078 0.922 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.750 3.250 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.205 1.205 19 C -0.172 4.172 20 C -0.154 4.154 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.230 -18.106 2.950 20.106 hybrid contribution -0.148 0.315 -1.085 1.139 sum -8.378 -17.791 1.865 19.753 Atomic orbital electron populations 1.23225 0.76667 1.03409 1.02585 1.86511 1.23265 1.34053 1.84445 1.24016 0.92515 0.81140 0.72341 1.90681 1.67204 1.36076 1.44407 1.21575 0.86843 1.00652 1.05583 1.21093 0.96368 0.91755 1.00368 1.21531 0.93866 0.97575 1.01467 1.21513 1.01133 0.93491 0.98913 1.21733 0.92246 0.86805 0.95290 1.85673 1.85241 1.19887 1.29540 1.20824 1.44102 0.94879 0.83693 0.92203 1.24928 0.99286 0.95728 0.97752 1.70010 1.49008 1.08201 1.26206 0.86088 0.78500 0.78427 0.82022 1.20479 1.20937 1.20456 1.22024 0.98407 0.94495 1.02311 1.21699 1.01365 0.96705 0.95640 0.91934 0.88341 0.91970 0.87719 0.87782 0.90121 0.91928 0.91956 0.91644 0.91684 0.94604 0.93293 0.91975 0.92073 0.92829 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.37 -3.92 10.56 -39.25 -0.41 -4.33 16 3 C 0.46 5.60 7.67 36.00 0.28 5.87 16 4 O -0.50 -7.66 13.72 -18.76 -0.26 -7.91 16 5 C -0.11 -1.12 5.29 -27.88 -0.15 -1.27 16 6 C -0.08 -1.04 1.84 -90.61 -0.17 -1.21 16 7 C -0.11 -1.44 5.20 -26.73 -0.14 -1.57 16 8 C -0.11 -2.07 5.57 -26.73 -0.15 -2.22 16 9 C 0.10 2.19 2.65 -26.73 -0.07 2.12 16 10 O -0.29 -8.41 9.43 -16.51 -0.16 -8.57 16 11 C -0.36 -10.64 9.77 30.88 0.30 -10.34 16 12 H 0.06 1.69 7.65 -52.48 -0.40 1.29 16 13 C 0.02 0.63 5.49 -17.51 -0.10 0.53 16 14 N -0.89 -28.55 13.67 55.48 0.76 -27.79 16 15 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.13 -2.71 5.54 -26.74 -0.15 -2.86 16 20 C -0.12 -1.85 4.94 -26.73 -0.13 -1.98 16 21 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 22 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.17 5.96 -51.93 -0.31 0.86 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -35.04 298.15 -5.74 -40.78 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.74 Total: -2.62 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 0.60 Total: -11.57 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 0.76 Total: -27.79 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.83 Total: -20.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.04 -5.74 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.763 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds