Wall clock time and date at job start Mon Mar 30 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47089 * 60.00096 * 6 4 3 8 8 C 1.53000 * 109.47058 * 300.00165 * 6 4 3 9 9 C 1.52999 * 109.46774 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47707 * 59.99749 * 9 8 6 11 11 C 1.53000 * 109.47209 * 299.99984 * 10 9 8 12 12 H 1.08994 * 109.46856 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.46999 * 299.99870 * 11 10 9 14 14 C 1.34922 * 116.99722 * 269.99572 * 13 11 10 15 15 H 1.07999 * 120.00349 * 0.02562 * 14 13 11 16 16 C 1.38634 * 119.99866 * 179.97438 * 14 13 11 17 17 N 1.31581 * 119.99934 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46768 * 89.99583 * 18 16 14 20 20 H 1.48496 * 109.47603 * 209.99630 * 18 16 14 21 21 H 1.48499 * 109.46980 * 330.00120 * 18 16 14 22 22 C 1.53003 * 109.46720 * 59.99795 * 11 10 9 23 23 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 28 28 H 1.09000 * 109.47115 * 299.99916 * 8 6 4 29 29 H 1.08998 * 109.47349 * 60.00126 * 8 6 4 30 30 H 1.09003 * 109.47119 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47319 * 299.99295 * 9 8 6 32 32 H 1.09000 * 109.46845 * 59.99859 * 10 9 8 33 33 H 1.08997 * 109.47737 * 179.97438 * 10 9 8 34 34 H 0.97009 * 120.00386 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47065 * 180.02562 * 22 11 10 36 36 H 1.09000 * 109.47397 * 60.00087 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 4.0350 5.0982 -1.2476 10 6 5.5629 5.0177 -1.2474 11 6 6.0340 4.2703 0.0018 12 1 7.1224 4.2126 0.0017 13 8 5.5936 4.9679 1.1686 14 6 6.4217 5.9083 1.6690 15 1 7.3689 6.1047 1.1887 16 6 6.0562 6.6232 2.7991 17 7 6.8635 7.5407 3.2869 18 14 4.4176 6.2842 3.6295 19 1 4.5934 5.2276 4.6582 20 1 3.9235 7.5266 4.2755 21 1 3.4336 5.8285 2.6151 22 6 5.4487 2.8567 0.0013 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.7859 3.1528 -2.1381 29 1 2.3612 3.7417 -1.2484 30 1 3.6998 5.6305 -2.1378 31 1 3.6991 5.6304 -0.3577 32 1 5.8988 4.4856 -2.1374 33 1 5.9799 6.0247 -1.2476 34 1 6.6080 8.0407 4.0779 35 1 5.7839 2.3244 0.8915 36 1 5.7846 2.3246 -0.8887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:37 Heat of formation + Delta-G solvation = -146.181475 kcal Electronic energy + Delta-G solvation = -18176.349235 eV Core-core repulsion = 15239.351748 eV Total energy + Delta-G solvation = -2936.997487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55254 -38.37261 -36.52158 -35.15576 -32.00262 -31.72044 -30.61153 -29.48781 -24.57182 -24.27093 -22.67381 -21.98635 -20.57990 -19.04549 -17.79183 -17.33733 -16.50792 -16.26434 -15.30468 -14.86417 -14.24107 -13.99939 -13.88598 -13.47808 -13.05480 -12.73943 -12.51036 -12.43129 -12.17005 -11.93846 -11.73570 -11.48577 -11.32263 -11.16090 -10.85017 -10.57602 -10.46748 -10.36574 -10.21081 -10.05252 -9.66512 -9.32615 -9.16793 -8.14397 -5.97068 -3.63379 2.37053 2.75937 3.42253 3.46041 3.59645 4.57173 4.70088 4.78226 4.86582 4.94218 5.00823 5.12140 5.34965 5.35248 5.37702 5.60525 5.62109 5.64220 5.68486 5.80772 5.82418 5.88715 5.99949 6.10227 6.32493 6.32995 6.44910 6.56294 6.64422 6.69376 6.83409 6.95159 7.89755 7.95059 8.39648 9.43474 9.98492 11.16103 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.006927 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.859488 B = 4040.974903 C = 4524.337917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.513 6.513 6 C -0.075 4.075 7 H 0.120 0.880 8 C -0.103 4.103 9 C -0.111 4.111 10 C -0.140 4.140 11 C 0.108 3.892 12 H 0.053 0.947 13 O -0.322 6.322 14 C -0.352 4.352 15 H 0.078 0.922 16 C 0.043 3.957 17 N -0.915 5.915 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.263 1.263 22 C -0.096 4.096 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.073 0.927 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -11.464 -9.159 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.401 6.401 6 C -0.094 4.094 7 H 0.137 0.863 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.178 4.178 11 C 0.049 3.951 12 H 0.071 0.929 13 O -0.238 6.238 14 C -0.430 4.430 15 H 0.096 0.904 16 C -0.154 4.154 17 N -0.561 5.561 18 Si 0.730 3.270 19 H -0.209 1.209 20 H -0.219 1.219 21 H -0.188 1.188 22 C -0.133 4.133 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.963 -11.724 -8.959 18.382 hybrid contribution -0.431 -0.241 0.429 0.654 sum -11.395 -11.965 -8.530 18.594 Atomic orbital electron populations 1.21796 0.92810 1.02710 1.03572 1.22975 0.95272 0.80868 1.02376 1.86547 1.25118 1.31761 1.84100 1.24200 0.80111 0.93175 0.71387 1.90621 1.60413 1.43375 1.45674 1.21123 0.97047 0.88411 1.02836 0.86251 1.21482 1.00610 0.96714 0.95300 1.21390 0.95876 0.95184 1.02358 1.22057 0.96022 1.01702 0.97982 1.21643 0.97003 0.89693 0.86755 0.92855 1.85245 1.45503 1.52345 1.40684 1.20433 0.99823 1.12710 1.10014 0.90387 1.24286 0.98511 0.95990 0.96586 1.69687 1.36997 1.25056 1.24379 0.86237 0.84329 0.76908 0.79545 1.20913 1.21877 1.18791 1.21563 0.91580 0.97239 1.02966 0.91515 0.91427 0.90473 0.91407 0.91478 0.92150 0.91198 0.92429 0.90304 0.92693 0.91233 0.92228 0.90805 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -5.13 10.12 -39.27 -0.40 -5.53 16 4 C 0.47 7.56 7.25 36.00 0.26 7.82 16 5 O -0.51 -9.25 15.73 -18.75 -0.29 -9.55 16 6 C -0.08 -1.24 2.48 -91.77 -0.23 -1.47 16 7 H 0.12 2.18 7.68 -51.93 -0.40 1.78 16 8 C -0.10 -1.48 5.14 -26.73 -0.14 -1.62 16 9 C -0.11 -1.75 5.78 -26.73 -0.15 -1.91 16 10 C -0.14 -2.40 5.63 -26.73 -0.15 -2.55 16 11 C 0.11 2.15 2.96 -26.73 -0.08 2.07 16 12 H 0.05 1.09 7.80 -51.93 -0.41 0.68 16 13 O -0.32 -7.97 6.91 -16.49 -0.11 -8.09 16 14 C -0.35 -10.01 10.23 30.88 0.32 -9.70 16 15 H 0.08 2.34 7.88 -52.49 -0.41 1.92 16 16 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 17 N -0.92 -28.20 13.96 55.48 0.77 -27.42 16 18 Si 0.90 22.86 28.62 -169.99 -4.86 18.00 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.10 -1.68 4.23 -26.73 -0.11 -1.79 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.46 7.68 -51.93 -0.40 1.06 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -31.82 299.26 -5.97 -37.80 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.82 Total: -1.77 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 0.23 Total: -7.95 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.81 Total: -23.16 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.82 -5.97 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.384 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds