Wall clock time and date at job start Mon Mar 30 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47089 * 60.00096 * 6 4 3 8 8 C 1.53000 * 109.47058 * 300.00165 * 6 4 3 9 9 C 1.52999 * 109.46774 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47707 * 59.99749 * 9 8 6 11 11 C 1.53000 * 109.47209 * 299.99984 * 10 9 8 12 12 H 1.08994 * 109.46856 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.46999 * 299.99870 * 11 10 9 14 14 C 1.34922 * 116.99722 * 269.99572 * 13 11 10 15 15 H 1.07999 * 120.00349 * 0.02562 * 14 13 11 16 16 C 1.38634 * 119.99866 * 179.97438 * 14 13 11 17 17 N 1.31581 * 119.99934 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46768 * 89.99583 * 18 16 14 20 20 H 1.48496 * 109.47603 * 209.99630 * 18 16 14 21 21 H 1.48499 * 109.46980 * 330.00120 * 18 16 14 22 22 C 1.53003 * 109.46720 * 59.99795 * 11 10 9 23 23 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 28 28 H 1.09000 * 109.47115 * 299.99916 * 8 6 4 29 29 H 1.08998 * 109.47349 * 60.00126 * 8 6 4 30 30 H 1.09003 * 109.47119 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47319 * 299.99295 * 9 8 6 32 32 H 1.09000 * 109.46845 * 59.99859 * 10 9 8 33 33 H 1.08997 * 109.47737 * 179.97438 * 10 9 8 34 34 H 0.97009 * 120.00386 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47065 * 180.02562 * 22 11 10 36 36 H 1.09000 * 109.47397 * 60.00087 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 4.0350 5.0982 -1.2476 10 6 5.5629 5.0177 -1.2474 11 6 6.0340 4.2703 0.0018 12 1 7.1224 4.2126 0.0017 13 8 5.5936 4.9679 1.1686 14 6 6.4217 5.9083 1.6690 15 1 7.3689 6.1047 1.1887 16 6 6.0562 6.6232 2.7991 17 7 6.8635 7.5407 3.2869 18 14 4.4176 6.2842 3.6295 19 1 4.5934 5.2276 4.6582 20 1 3.9235 7.5266 4.2755 21 1 3.4336 5.8285 2.6151 22 6 5.4487 2.8567 0.0013 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.7859 3.1528 -2.1381 29 1 2.3612 3.7417 -1.2484 30 1 3.6998 5.6305 -2.1378 31 1 3.6991 5.6304 -0.3577 32 1 5.8988 4.4856 -2.1374 33 1 5.9799 6.0247 -1.2476 34 1 6.6080 8.0407 4.0779 35 1 5.7839 2.3244 0.8915 36 1 5.7846 2.3246 -0.8887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224383175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:37 Heat of formation + Delta-G solvation = -165.060388 kcal Electronic energy + Delta-G solvation = -18177.167886 eV Core-core repulsion = 15239.351748 eV Total energy + Delta-G solvation = -2937.816138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.79330 -39.87813 -37.77531 -36.83453 -34.00851 -32.81257 -31.86418 -30.97900 -26.51491 -25.63545 -23.65803 -23.35596 -21.83542 -20.57020 -19.75938 -18.68411 -17.62257 -17.56527 -17.19991 -16.15001 -15.83887 -15.48317 -15.24918 -14.84193 -14.40371 -14.24035 -13.96758 -13.66265 -13.52965 -13.15211 -13.02362 -12.89099 -12.80417 -12.59533 -12.40818 -11.95927 -11.93922 -11.79112 -11.73605 -11.52359 -11.23671 -10.98036 -10.93722 -10.26786 -8.22693 -5.90185 1.11736 1.39302 1.41751 1.59710 1.65383 2.45471 3.10784 3.35026 3.56783 3.74177 3.88506 4.00837 4.08563 4.16547 4.27154 4.29789 4.34701 4.47228 4.52270 4.68157 4.73979 4.85505 4.92575 4.97545 5.04451 5.09622 5.15332 5.22329 5.30169 5.40085 5.46049 5.57366 5.65042 6.20327 6.69173 7.17789 7.88063 8.93782 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.006927 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.859488 B = 4040.974903 C = 4524.337917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.359 6.359 4 C 0.475 3.525 5 O -0.536 6.536 6 C -0.077 4.077 7 H 0.099 0.901 8 C -0.095 4.095 9 C -0.108 4.108 10 C -0.135 4.135 11 C 0.095 3.905 12 H 0.040 0.960 13 O -0.332 6.332 14 C -0.343 4.343 15 H 0.048 0.952 16 C -0.015 4.015 17 N -0.958 5.958 18 Si 0.965 3.035 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.253 1.253 22 C -0.088 4.088 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.271 0.729 35 H 0.056 0.944 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 -12.836 -10.491 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.276 6.276 4 C 0.320 3.680 5 O -0.425 6.425 6 C -0.096 4.096 7 H 0.117 0.883 8 C -0.132 4.132 9 C -0.145 4.145 10 C -0.173 4.173 11 C 0.037 3.963 12 H 0.058 0.942 13 O -0.248 6.248 14 C -0.422 4.422 15 H 0.065 0.935 16 C -0.208 4.208 17 N -0.606 5.606 18 Si 0.790 3.210 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.176 1.176 22 C -0.125 4.125 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.341 -13.110 -10.314 21.360 hybrid contribution 0.356 0.106 0.763 0.849 sum -12.985 -13.004 -9.551 20.711 Atomic orbital electron populations 1.21824 0.90285 1.04410 1.03721 1.23331 0.97234 0.79260 1.02562 1.86532 1.23778 1.33798 1.83502 1.23962 0.80696 0.92505 0.70875 1.90615 1.61087 1.43944 1.46904 1.21053 0.96114 0.89076 1.03329 0.88298 1.21471 1.01630 0.95310 0.94831 1.21366 0.94510 0.96360 1.02286 1.22006 0.97310 1.00390 0.97592 1.22002 0.96759 0.91099 0.86409 0.94172 1.85194 1.44973 1.51789 1.42847 1.20362 0.99036 1.13058 1.09704 0.93452 1.25107 1.02187 0.96016 0.97460 1.69800 1.39075 1.26465 1.25269 0.85262 0.80166 0.77000 0.78595 1.20599 1.20974 1.17640 1.21461 0.92658 0.95171 1.03258 0.90945 0.91665 0.87997 0.91782 0.90843 0.89877 0.89398 0.89481 0.93409 0.89261 0.93422 0.91980 0.92561 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.29 71.98 0.74 -1.19 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -9.45 10.12 -51.47 -0.52 -9.97 16 4 C 0.48 14.45 7.25 71.23 0.52 14.97 16 5 O -0.54 -18.48 15.73 21.97 0.35 -18.13 16 6 C -0.08 -2.40 2.48 -11.54 -0.03 -2.43 16 7 H 0.10 3.53 7.68 -2.39 -0.02 3.52 16 8 C -0.10 -2.41 5.14 30.59 0.16 -2.26 16 9 C -0.11 -3.17 5.78 30.59 0.18 -2.99 16 10 C -0.14 -4.47 5.63 30.59 0.17 -4.30 16 11 C 0.10 3.79 2.96 30.60 0.09 3.88 16 12 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 13 O -0.33 -16.64 6.91 -81.91 -0.57 -17.21 16 14 C -0.34 -20.09 10.23 67.91 0.69 -19.40 16 15 H 0.05 2.99 7.88 -2.91 -0.02 2.97 16 16 C -0.02 -0.92 5.49 84.82 0.47 -0.45 16 17 N -0.96 -60.40 13.96 21.61 0.30 -60.10 16 18 Si 0.96 47.42 28.62 68.60 1.96 49.39 16 19 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.25 -11.84 7.11 99.48 0.71 -11.13 16 22 C -0.09 -2.99 4.23 30.60 0.13 -2.86 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.71 7.68 -2.39 -0.02 1.69 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 35 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.10 2.82 8.10 -2.39 -0.02 2.80 16 Total: -1.00 -69.37 299.26 6.12 -63.24 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.04 Total: 8.36 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.56 Total: -15.58 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.30 Total: -60.10 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.74 Total: -45.31 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.96 Total: 49.39 kcal Total: -69.37 6.12 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.816 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds