Wall clock time and date at job start Mon Mar 30 2020 18:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47133 * 2 1 4 4 H 1.09000 * 109.46704 * 304.24811 * 3 2 1 5 5 C 1.50700 * 109.46900 * 184.24970 * 3 2 1 6 6 H 1.07992 * 120.00250 * 239.99813 * 5 3 2 7 7 C 1.37884 * 119.99962 * 60.00305 * 5 3 2 8 8 N 1.31522 * 119.99578 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00054 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47163 * 119.99860 * 9 7 5 12 12 H 1.48503 * 109.46998 * 239.99674 * 9 7 5 13 13 N 1.46894 * 109.46808 * 64.25367 * 3 2 1 14 14 C 1.46905 * 110.99317 * 205.86572 * 13 3 2 15 15 C 1.53010 * 109.46740 * 174.81311 * 14 13 3 16 16 H 1.08999 * 109.60435 * 60.00178 * 15 14 13 17 17 C 1.53022 * 109.60076 * 180.32442 * 15 14 13 18 18 N 1.46166 * 109.88771 * 168.73034 * 17 15 14 19 19 C 1.33872 * 122.60222 * 341.99580 * 18 17 15 20 20 O 1.21281 * 118.83852 * 181.68656 * 19 18 17 21 21 C 1.50355 * 122.33085 * 1.66218 * 19 18 17 22 22 O 1.42966 * 109.81138 * 344.12428 * 21 19 18 23 23 H 1.09001 * 109.47141 * 174.89421 * 1 2 3 24 24 H 1.09007 * 109.46738 * 294.89451 * 1 2 3 25 25 H 1.08995 * 109.47096 * 54.89574 * 1 2 3 26 26 H 1.09001 * 109.47292 * 239.99588 * 2 1 3 27 27 H 1.09000 * 109.47130 * 119.99766 * 2 1 3 28 28 H 0.97001 * 119.98895 * 180.02562 * 8 7 5 29 29 H 1.00892 * 111.00663 * 81.91268 * 13 3 2 30 30 H 1.08997 * 109.46853 * 294.80809 * 14 13 3 31 31 H 1.08999 * 109.47492 * 54.81423 * 14 13 3 32 32 H 1.09003 * 109.39921 * 289.05394 * 17 15 14 33 33 H 1.09003 * 109.39586 * 48.77998 * 17 15 14 34 34 H 0.96996 * 118.67350 * 161.82051 * 18 17 15 35 35 H 1.08997 * 109.40943 * 224.01709 * 21 19 18 36 36 H 1.09003 * 109.35529 * 104.19122 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5434 1.4438 -0.1053 6 1 4.1391 1.8917 0.6762 7 6 4.1583 0.8731 -1.1995 8 7 3.4328 0.3272 -2.1511 9 14 6.0217 0.8752 -1.3304 10 1 6.6008 1.5464 -0.1390 11 1 6.5147 -0.5238 -1.3994 12 1 6.4309 1.6053 -2.5571 13 7 1.6360 2.1047 1.2475 14 6 1.5395 3.5590 1.0640 15 6 0.9936 4.1991 2.3421 16 1 1.6635 3.9827 3.1744 17 6 0.8842 5.7134 2.1515 18 7 0.1219 6.2993 3.2525 19 6 -0.6698 5.5712 4.0495 20 8 -1.2955 6.1327 4.9236 21 6 -0.8112 4.0819 3.8990 22 8 -0.3088 3.6738 2.6243 23 1 -0.3633 -1.0236 -0.0915 24 1 -0.3633 0.4326 0.9323 25 1 -0.3633 0.5909 -0.8407 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8655 -0.0746 -2.9206 29 1 2.2687 1.8763 1.9994 30 1 2.5280 3.9644 0.8482 31 1 0.8682 3.7767 0.2333 32 1 1.8834 6.1484 2.1273 33 1 0.3762 5.9240 1.2104 34 1 0.1948 7.2531 3.4133 35 1 -1.8632 3.8081 3.9785 36 1 -0.2466 3.5839 4.6873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:04 Heat of formation + Delta-G solvation = -86.010891 kcal Electronic energy + Delta-G solvation = -17878.499174 eV Core-core repulsion = 14976.403631 eV Total energy + Delta-G solvation = -2902.095543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46707 -37.88404 -36.05065 -34.76749 -32.90412 -31.44335 -29.71925 -27.38330 -26.50841 -24.50907 -22.73758 -21.70711 -19.91185 -19.23018 -17.63886 -17.37545 -16.63681 -15.87538 -15.36694 -14.92904 -14.55237 -14.47448 -13.86714 -13.68419 -13.30657 -13.02656 -12.55686 -12.35777 -11.95144 -11.55460 -11.39217 -11.18918 -10.98942 -10.80168 -10.68040 -10.39346 -10.16948 -9.60928 -9.53357 -9.40628 -9.22827 -9.07966 -8.42726 -7.29217 -6.04413 -4.18283 2.40615 3.00301 3.21671 3.30903 3.32615 3.77939 4.26844 4.34832 4.64325 4.95169 5.10209 5.20283 5.22371 5.33953 5.46767 5.63459 5.77133 6.13696 6.33831 6.44454 6.48826 6.55464 6.76000 6.94651 7.11344 7.17925 7.22535 7.42150 7.57081 7.74282 7.97592 8.05128 8.08106 8.28175 8.60116 8.94794 9.49845 10.95397 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.005468 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.595013 B = 5119.086775 C = 5720.358299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.077 3.923 15 C 0.076 3.924 16 H 0.065 0.935 17 C 0.080 3.920 18 N -0.719 5.719 19 C 0.491 3.509 20 O -0.556 6.556 21 C 0.046 3.954 22 O -0.341 6.341 23 H 0.023 0.977 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.326 0.674 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.128 0.872 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 7.706 7.054 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.308 5.308 14 C -0.054 4.054 15 C 0.018 3.982 16 H 0.083 0.917 17 C -0.045 4.045 18 N -0.372 5.372 19 C 0.278 3.722 20 O -0.435 6.435 21 C -0.034 4.034 22 O -0.259 6.259 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.146 0.854 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.958 7.421 7.025 11.358 hybrid contribution 2.330 0.815 -0.063 2.469 sum -2.628 8.236 6.962 11.100 Atomic orbital electron populations 1.21684 0.98816 0.98174 1.00645 1.21483 0.92245 0.99055 1.01585 1.19169 0.92592 0.91349 0.86096 0.94938 1.21900 0.92701 1.38281 1.05844 0.92844 1.24936 0.97939 0.94936 0.95660 1.69897 1.34811 1.37844 1.09535 0.86609 0.86067 0.77809 0.77883 1.19983 1.20934 1.21052 1.60806 1.55278 1.04888 1.09815 1.21722 0.98740 0.91344 0.93578 1.22646 0.85268 0.90079 1.00247 0.91692 1.22228 0.96957 0.95305 0.90023 1.45635 1.46763 1.12063 1.32749 1.21250 0.78325 0.91801 0.80872 1.90753 1.45816 1.72540 1.34371 1.22765 1.03074 0.88772 0.88812 1.88412 1.32280 1.71986 1.33207 0.95827 0.93105 0.94532 0.89281 0.95128 0.92881 0.85779 0.93399 0.90807 0.89426 0.90275 0.76535 0.85444 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.73 37.16 0.36 -2.42 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.60 16 3 C 0.22 5.06 1.98 -68.87 -0.14 4.92 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -13.98 8.47 -34.44 -0.29 -14.27 16 6 H 0.05 1.34 7.73 -52.49 -0.41 0.94 16 7 C 0.07 1.79 5.29 -17.81 -0.09 1.70 16 8 N -0.88 -24.17 11.30 55.43 0.63 -23.54 16 9 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.16 5.61 -107.94 -0.61 -13.77 16 14 C 0.08 1.25 5.19 -3.82 -0.02 1.23 16 15 C 0.08 1.00 2.92 -26.71 -0.08 0.92 16 16 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 17 C 0.08 0.83 6.76 -4.21 -0.03 0.80 16 18 N -0.72 -7.94 5.54 -60.86 -0.34 -8.27 16 19 C 0.49 6.54 7.84 -11.56 -0.09 6.45 16 20 O -0.56 -9.16 17.84 5.56 0.10 -9.06 16 21 C 0.05 0.55 6.98 35.84 0.25 0.80 16 22 O -0.34 -4.95 10.38 -35.23 -0.37 -5.31 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.33 6.23 8.45 -39.30 -0.33 5.89 16 30 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.40 3.76 8.86 -40.82 -0.36 3.40 16 35 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -29.53 298.14 -6.95 -36.48 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.56 Total: 6.17 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.27 Total: -2.47 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.32 Total: -45.58 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.27 Total: -14.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.53 -6.95 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.529 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds