Wall clock time and date at job start Mon Mar 30 2020 18:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48508 * 109.46993 * 270.00040 * 3 2 1 5 5 H 1.48507 * 109.47290 * 29.99783 * 3 2 1 6 6 H 1.48495 * 109.47113 * 150.00191 * 3 2 1 7 7 C 1.38810 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99808 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00341 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47088 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47552 * 304.99835 * 11 10 9 13 13 O 1.42898 * 109.47379 * 65.00085 * 11 10 9 14 14 C 1.53002 * 109.46969 * 184.99743 * 11 10 9 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 11 17 17 O 1.21284 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.47303 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49668 * 243.62498 * 19 18 16 21 21 C 1.53002 * 117.49916 * 175.00267 * 19 18 16 22 22 H 0.97002 * 119.99704 * 0.02562 * 1 2 3 23 23 H 0.97005 * 120.00170 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.46951 * 59.99789 * 10 9 7 25 25 H 1.09003 * 109.46470 * 299.99580 * 10 9 7 26 26 H 0.96698 * 114.00171 * 59.99966 * 13 11 10 27 27 H 1.09004 * 109.46930 * 59.99996 * 14 11 10 28 28 H 1.09000 * 109.47312 * 299.99939 * 14 11 10 29 29 H 0.96999 * 120.00080 * 0.02562 * 15 14 11 30 30 H 1.09000 * 109.46978 * 300.00347 * 18 16 15 31 31 H 1.08996 * 109.47197 * 59.99985 * 18 16 15 32 32 H 1.08993 * 115.55013 * 29.32445 * 19 18 16 33 33 H 1.09002 * 117.50056 * 359.97438 * 20 19 18 34 34 H 1.08995 * 117.50092 * 145.01603 * 20 19 18 35 35 H 1.09000 * 117.49748 * 214.97717 * 21 19 18 36 36 H 1.09004 * 117.49633 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8659 -1.5454 -0.8418 13 8 5.9806 -1.5445 1.2210 14 6 6.3803 -3.5110 -0.1257 15 7 7.8206 -3.2432 -0.1263 16 6 8.6956 -4.2633 -0.2276 17 8 8.2906 -5.4029 -0.3186 18 6 10.1772 -3.9880 -0.2276 19 6 10.9412 -5.3076 -0.3534 20 6 11.8357 -5.7204 0.8173 21 6 12.4633 -5.2325 -0.4900 22 1 -0.4850 0.8401 -0.0004 23 1 3.8646 -0.3622 0.0004 24 1 3.8490 -3.0423 -0.8902 25 1 3.8484 -3.0426 0.8898 26 1 5.7868 -2.0631 2.0139 27 1 6.1024 -4.0044 -1.0571 28 1 6.1308 -4.1569 0.7162 29 1 8.1446 -2.3318 -0.0531 30 1 10.4268 -3.3424 -1.0697 31 1 10.4551 -3.4942 0.7035 32 1 10.4256 -6.0994 -0.8967 33 1 11.8802 -5.0517 1.6769 34 1 11.9085 -6.7840 1.0444 35 1 12.9490 -5.9751 -1.1230 36 1 12.9203 -4.2429 -0.4907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272351342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:46 Heat of formation + Delta-G solvation = -58.611621 kcal Electronic energy + Delta-G solvation = -16894.300117 eV Core-core repulsion = 13993.392695 eV Total energy + Delta-G solvation = -2900.907422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97791 -38.00313 -37.16403 -34.50329 -34.13234 -31.54926 -30.48075 -28.83837 -25.48231 -22.68603 -22.41994 -21.58078 -21.21664 -20.13145 -17.80069 -17.56203 -16.43578 -16.17789 -15.94574 -15.15562 -14.86968 -14.49179 -14.34147 -13.75039 -13.59312 -13.21676 -13.12328 -12.48338 -12.37108 -11.98301 -11.81803 -11.74082 -11.32667 -10.88638 -10.83391 -10.67018 -10.33992 -10.19496 -10.06541 -9.72807 -9.56294 -9.17344 -8.94569 -7.27921 -5.79317 -3.15752 2.53809 3.00235 3.37970 3.43508 3.45398 3.52583 4.37123 4.44345 4.54531 4.58464 4.61862 4.69312 4.83421 5.10567 5.13867 5.23976 5.32429 5.35895 5.44870 5.49773 5.58732 5.70644 5.75623 5.80233 5.85062 6.01248 6.31484 6.40231 6.52857 7.39432 7.74650 7.96201 8.12498 8.39150 9.18360 9.90298 10.09857 11.38728 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.062701 B = 0.003602 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.454552 B = 7770.856728 C = 8031.197409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.090 3.910 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.542 6.542 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.179 4.179 21 C -0.182 4.182 22 H 0.260 0.740 23 H 0.365 0.635 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.376 0.624 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.405 0.595 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.087 -7.236 0.344 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.035 4.035 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.419 6.419 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.216 4.216 21 C -0.219 4.219 22 H 0.070 0.930 23 H 0.199 0.801 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.223 0.777 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.239 0.761 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.724 -7.672 -0.130 24.934 hybrid contribution 0.392 1.198 0.396 1.321 sum 24.116 -6.474 0.266 24.971 Atomic orbital electron populations 1.69710 1.05149 1.25939 1.57280 1.24679 0.95256 0.97338 1.01777 0.86531 0.79471 0.84720 0.77823 1.21090 1.21714 1.19867 1.19045 0.80511 0.94795 1.43474 0.89249 1.42576 1.03964 1.01971 1.91077 1.21182 0.88529 0.90281 0.99746 1.22455 0.94568 0.92338 0.88125 0.87784 1.86542 1.85914 1.48169 1.15604 1.22062 0.79808 0.98270 1.03362 1.45943 1.06575 1.10210 1.74898 1.20586 0.88612 0.85020 0.75915 1.90698 1.80282 1.21620 1.49316 1.21220 0.91456 0.98070 1.04321 1.22057 0.91624 0.98676 1.03503 1.23038 1.04290 1.01993 0.92258 1.23004 0.95193 1.02853 1.00806 0.92995 0.80116 0.94432 0.95035 0.77669 0.90313 0.90953 0.76064 0.88463 0.88761 0.86382 0.88827 0.88752 0.88695 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.69 5.35 -59.91 -0.32 -18.01 16 10 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 11 C 0.08 1.18 3.09 -26.73 -0.08 1.10 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 O -0.56 -7.86 13.03 -35.23 -0.46 -8.32 16 14 C 0.09 1.09 5.34 -4.04 -0.02 1.07 16 15 N -0.72 -7.66 5.45 -60.29 -0.33 -7.99 16 16 C 0.51 5.93 7.83 -10.99 -0.09 5.85 16 17 O -0.54 -8.46 15.56 5.55 0.09 -8.38 16 18 C -0.11 -0.89 5.98 -27.88 -0.17 -1.05 16 19 C -0.14 -1.23 5.41 -90.62 -0.49 -1.72 16 20 C -0.18 -1.37 10.18 -26.73 -0.27 -1.64 16 21 C -0.18 -1.24 10.25 -26.73 -0.27 -1.52 16 22 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 23 H 0.37 8.56 5.53 -40.82 -0.23 8.33 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.38 4.35 9.05 45.56 0.41 4.77 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.40 3.54 8.35 -40.82 -0.34 3.20 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.61 7.88 -51.93 -0.41 0.20 16 32 H 0.12 1.27 7.30 -51.93 -0.38 0.89 16 33 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -34.34 307.56 -6.75 -41.09 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.76 Total: 10.83 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.67 Total: -2.71 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.13 Total: -54.67 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.37 Total: -16.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.34 -6.75 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272351342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.517 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds