Wall clock time and date at job start Mon Mar 30 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34634 * 117.00049 * 2 1 4 4 O 1.21512 * 119.99610 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00328 * 179.72563 * 3 2 1 6 6 C 1.46968 * 120.59318 * 359.97438 * 5 3 2 7 7 C 1.53815 * 108.39838 * 124.75805 * 6 5 3 8 8 H 1.08998 * 109.87989 * 289.76549 * 7 6 5 9 9 C 1.52992 * 109.53363 * 169.30629 * 7 6 5 10 10 N 1.46959 * 108.57902 * 49.63719 * 7 6 5 11 11 C 1.36938 * 120.59637 * 124.67434 * 10 7 6 12 12 H 1.08004 * 119.99415 * 330.93538 * 11 10 7 13 13 C 1.38809 * 120.00721 * 150.93833 * 11 10 7 14 14 N 1.31617 * 119.99531 * 343.14406 * 13 11 10 15 15 Si 1.86798 * 120.00192 * 163.14163 * 13 11 10 16 16 H 1.48499 * 109.46824 * 60.00084 * 15 13 11 17 17 H 1.48498 * 109.46976 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47396 * 300.00179 * 15 13 11 19 19 C 1.46966 * 118.81475 * 304.64486 * 10 7 6 20 20 H 1.09002 * 109.75378 * 175.05603 * 19 10 7 21 21 C 1.52999 * 109.61224 * 295.48572 * 19 10 7 22 22 C 1.46968 * 120.59563 * 180.27908 * 5 3 2 23 23 H 1.08993 * 109.47553 * 59.99838 * 1 2 3 24 24 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99245 * 1 2 3 26 26 H 1.08998 * 109.61226 * 244.54209 * 6 5 3 27 27 H 1.09003 * 109.60546 * 5.05317 * 6 5 3 28 28 H 1.09008 * 109.47263 * 302.53391 * 9 7 6 29 29 H 1.08998 * 109.47423 * 62.53198 * 9 7 6 30 30 H 1.09001 * 109.47499 * 182.53496 * 9 7 6 31 31 H 0.97006 * 119.99777 * 175.69675 * 14 13 11 32 32 H 1.08997 * 109.47124 * 179.14092 * 21 19 10 33 33 H 1.08997 * 109.47185 * 299.14051 * 21 19 10 34 34 H 1.08995 * 109.46845 * 59.14264 * 21 19 10 35 35 H 1.08998 * 109.60733 * 354.94503 * 22 5 3 36 36 H 1.08995 * 109.60850 * 115.46044 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4091 1.2702 0.0056 6 6 4.2223 0.0460 0.0123 7 6 5.1892 0.0989 -1.1828 8 1 4.6347 -0.0200 -2.1137 9 6 6.2231 -1.0214 -1.0543 10 7 5.8698 1.4014 -1.1771 11 6 7.2373 1.4732 -1.1716 12 1 7.8175 0.6840 -0.7166 13 6 7.8777 2.5601 -1.7504 14 7 7.2236 3.3430 -2.5819 15 14 9.6679 2.9118 -1.3492 16 1 10.5020 1.7497 -1.7482 17 1 10.1137 4.1184 -2.0912 18 1 9.8114 3.1463 0.1100 19 6 5.0566 2.6256 -1.1782 20 1 5.7037 3.4978 -1.0852 21 6 4.2617 2.7129 -2.4826 22 6 4.0898 2.5727 0.0118 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 4.7884 -0.0121 0.9419 27 1 3.5731 -0.8248 -0.0787 28 1 6.7530 -0.9199 -0.1071 29 1 5.7185 -1.9870 -1.0867 30 1 6.9346 -0.9554 -1.8775 31 1 7.6512 4.1377 -2.9379 32 1 3.6480 3.6136 -2.4744 33 1 4.9508 2.7504 -3.3262 34 1 3.6199 1.8369 -2.5762 35 1 3.3531 3.3709 -0.0795 36 1 4.6467 2.6900 0.9414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867593273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:46 Heat of formation + Delta-G solvation = -48.637628 kcal Electronic energy + Delta-G solvation = -18940.147845 eV Core-core repulsion = 16039.672928 eV Total energy + Delta-G solvation = -2900.474917 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18475 -37.98433 -35.95870 -34.08288 -32.66682 -31.28169 -28.06821 -27.51070 -26.30430 -25.20712 -23.59761 -21.20067 -20.42296 -18.79200 -17.73729 -16.76064 -16.26087 -15.74556 -15.14161 -14.37064 -14.04847 -13.85030 -13.77383 -13.31313 -13.14530 -12.55212 -11.98278 -11.93892 -11.73477 -11.50757 -11.17666 -11.01726 -10.77491 -10.63958 -10.59760 -10.52753 -10.13980 -10.11103 -10.03784 -9.71633 -9.49147 -8.51571 -8.22535 -6.67235 -5.79293 -3.27452 2.58639 3.23394 3.37134 3.43914 3.44453 4.32446 4.47677 5.20413 5.25873 5.31807 5.35018 5.53648 5.67862 5.76359 5.89651 5.99364 6.16998 6.24930 6.26609 6.33843 6.44377 6.59056 6.67176 6.77119 6.88055 6.94455 7.01542 7.09562 7.56117 7.65327 7.79531 7.90683 8.40309 8.70132 9.17079 9.78984 10.36143 11.25614 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.007534 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.748130 B = 3715.606493 C = 4101.852818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.375 6.375 3 C 0.642 3.358 4 O -0.586 6.586 5 N -0.576 5.576 6 C 0.099 3.901 7 C 0.154 3.846 8 H 0.032 0.968 9 C -0.135 4.135 10 N -0.582 5.582 11 C -0.252 4.252 12 H 0.072 0.928 13 C 0.004 3.996 14 N -0.896 5.896 15 Si 0.900 3.100 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.179 3.821 20 H 0.109 0.891 21 C -0.140 4.140 22 C 0.107 3.893 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.254 0.746 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -6.485 4.421 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.289 6.289 3 C 0.396 3.604 4 O -0.477 6.477 5 N -0.314 5.314 6 C -0.026 4.026 7 C 0.046 3.954 8 H 0.050 0.950 9 C -0.193 4.193 10 N -0.304 5.304 11 C -0.381 4.381 12 H 0.089 0.911 13 C -0.195 4.195 14 N -0.540 5.540 15 Si 0.729 3.271 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.211 1.211 19 C 0.071 3.929 20 H 0.126 0.874 21 C -0.199 4.199 22 C -0.015 4.015 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.943 -6.094 4.277 10.887 hybrid contribution 0.717 0.306 0.135 0.791 sum -7.226 -5.788 4.413 10.256 Atomic orbital electron populations 1.23070 0.75478 1.02790 1.02351 1.86229 1.23349 1.31770 1.87543 1.18114 0.83617 0.81741 0.76914 1.90929 1.64421 1.34864 1.57492 1.46934 1.01086 1.09530 1.73881 1.22510 0.93963 0.85309 1.00770 1.20877 0.92455 0.88088 0.93959 0.94990 1.21765 0.99113 0.95708 1.02734 1.44157 1.02143 0.98435 1.85706 1.19152 0.81427 1.07665 1.29899 0.91080 1.25046 0.97582 1.00536 0.96312 1.70033 1.37474 1.15979 1.30536 0.86426 0.85277 0.77492 0.77871 1.20971 1.21736 1.21127 1.20780 0.90222 0.92152 0.89722 0.87355 1.21982 0.98922 0.97579 1.01373 1.22625 0.95535 0.82092 1.01283 0.92194 0.88504 0.92299 0.91588 0.90334 0.92603 0.94021 0.91468 0.93619 0.95207 0.90492 0.95978 0.89847 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.56 101.05 1.07 1.76 16 2 O -0.37 -6.09 9.20 -40.31 -0.37 -6.46 16 3 C 0.64 12.38 8.43 54.05 0.46 12.83 16 4 O -0.59 -12.56 15.54 -19.28 -0.30 -12.86 16 5 N -0.58 -11.12 2.60 -177.97 -0.46 -11.58 16 6 C 0.10 1.75 5.95 -3.36 -0.02 1.73 16 7 C 0.15 3.07 3.24 -67.26 -0.22 2.85 16 8 H 0.03 0.69 7.38 -51.93 -0.38 0.31 16 9 C -0.14 -2.38 7.94 37.15 0.29 -2.08 16 10 N -0.58 -13.61 2.68 -156.74 -0.42 -14.03 16 11 C -0.25 -6.39 8.55 -15.06 -0.13 -6.52 16 12 H 0.07 1.75 6.25 -52.48 -0.33 1.43 16 13 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 14 N -0.90 -24.46 10.13 55.49 0.56 -23.90 16 15 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.18 4.09 2.34 -67.46 -0.16 3.93 16 20 H 0.11 2.76 6.04 -51.93 -0.31 2.45 16 21 C -0.14 -3.18 8.96 37.16 0.33 -2.85 16 22 C 0.11 2.17 5.97 -3.57 -0.02 2.15 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 27 H 0.08 1.24 6.91 -51.93 -0.36 0.88 16 28 H 0.05 0.97 7.47 -51.92 -0.39 0.58 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 31 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.95 7.16 -51.93 -0.37 1.57 16 34 H 0.02 0.49 7.00 -51.93 -0.36 0.12 16 35 H 0.08 1.70 6.97 -51.93 -0.36 1.34 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -29.24 285.95 -5.55 -34.79 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.36 Total: 0.15 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 1.52 Total: 13.82 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.32 Total: -49.51 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.67 Total: -19.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.24 -5.55 -34.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867593273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.849 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds