Wall clock time and date at job start Mon Mar 30 2020 18:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47010 * 2 1 4 4 C 1.47089 * 125.56265 * 269.97579 * 3 2 1 5 5 C 1.54088 * 103.77935 * 179.97438 * 4 3 2 6 6 H 1.08993 * 110.64412 * 241.30844 * 5 4 3 7 7 C 1.53005 * 110.52036 * 118.63177 * 5 4 3 8 8 N 1.46893 * 109.47447 * 183.96117 * 7 5 4 9 9 C 1.46894 * 111.00414 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47124 * 34.99171 * 9 8 7 11 11 C 1.52998 * 109.46977 * 274.99900 * 9 8 7 12 12 C 1.50697 * 109.47380 * 155.00096 * 9 8 7 13 13 H 1.07997 * 120.00161 * 95.24631 * 12 9 8 14 14 C 1.37881 * 119.99763 * 275.24159 * 12 9 8 15 15 N 1.31515 * 120.00078 * 355.16415 * 14 12 9 16 16 Si 1.86800 * 119.99987 * 175.16268 * 14 12 9 17 17 H 1.48498 * 109.47113 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46933 * 240.00318 * 16 14 12 19 19 H 1.48498 * 109.47048 * 120.00090 * 16 14 12 20 20 O 1.45697 * 104.00829 * 0.02562 * 5 4 3 21 21 C 1.33772 * 109.47790 * 359.97438 * 20 5 4 22 22 O 1.21509 * 123.07265 * 179.97438 * 21 20 5 23 23 H 1.09006 * 109.46709 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46896 * 299.99709 * 1 2 3 25 25 H 1.08997 * 109.47089 * 60.00019 * 1 2 3 26 26 H 1.08997 * 109.47283 * 240.00509 * 2 1 3 27 27 H 1.08997 * 109.47089 * 119.99981 * 2 1 3 28 28 H 1.09005 * 110.56237 * 61.42707 * 4 3 2 29 29 H 1.08998 * 110.56693 * 298.57805 * 4 3 2 30 30 H 1.09000 * 109.47007 * 63.95838 * 7 5 4 31 31 H 1.09004 * 109.46689 * 303.96248 * 7 5 4 32 32 H 1.00901 * 110.99914 * 303.95693 * 8 7 5 33 33 H 1.09005 * 109.47337 * 295.05168 * 11 9 8 34 34 H 1.08998 * 109.47432 * 55.04903 * 11 9 8 35 35 H 1.09002 * 109.47508 * 175.04684 * 11 9 8 36 36 H 0.97003 * 119.99745 * 5.14313 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3040 2.1876 -1.1965 5 6 2.7800 3.5369 -0.6247 6 1 2.1159 4.3426 -0.9374 7 6 4.2169 3.8280 -1.0624 8 7 4.6798 5.0699 -0.4292 9 6 6.0587 5.3821 -0.8278 10 1 6.2164 5.0749 -1.8617 11 6 7.0345 4.6323 0.0813 12 6 6.2943 6.8652 -0.7028 13 1 6.7405 7.2673 0.1948 14 6 5.9404 7.7089 -1.7343 15 7 5.4858 7.2117 -2.8638 16 14 6.1065 9.5579 -1.5275 17 1 6.6380 9.8588 -0.1740 18 1 4.7754 10.1958 -1.6902 19 1 7.0388 10.0890 -2.5542 20 8 2.7141 3.3512 0.8189 21 6 2.2775 2.1162 1.0902 22 8 2.1302 1.6987 2.2217 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.4010 2.3218 -1.7923 29 1 3.0910 1.7244 -1.7916 30 1 4.2513 3.9381 -2.1463 31 1 4.8628 3.0034 -0.7603 32 1 4.0598 5.8371 -0.6418 33 1 6.9378 5.0024 1.1020 34 1 6.8069 3.5666 0.0582 35 1 8.0542 4.7935 -0.2686 36 1 5.3289 6.2580 -2.9456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:34 Heat of formation + Delta-G solvation = -78.700123 kcal Electronic energy + Delta-G solvation = -17890.680546 eV Core-core repulsion = 14988.902022 eV Total energy + Delta-G solvation = -2901.778525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41550 -37.33459 -35.98153 -35.88602 -32.74693 -31.56754 -30.32469 -28.13677 -25.08336 -24.33051 -23.87107 -22.07962 -20.61687 -20.14247 -17.57532 -17.07026 -16.81763 -16.11402 -15.22172 -14.83148 -14.25440 -13.99744 -13.90137 -13.79782 -13.74138 -13.41030 -12.94876 -12.52597 -12.20566 -11.97289 -11.78653 -11.46874 -11.34829 -10.88402 -10.81520 -10.71545 -10.40220 -10.20983 -10.17630 -9.97448 -9.00109 -8.75824 -8.43431 -7.32732 -6.50320 -4.24034 2.53111 2.89910 3.39741 3.41442 3.57754 3.62176 4.15358 4.43208 4.51560 4.64249 4.96868 5.02314 5.09624 5.12477 5.23475 5.39075 5.42564 5.49855 5.67588 5.89980 5.92909 5.97983 6.10456 6.41257 6.43459 6.64816 6.70110 6.91422 7.32212 7.52938 7.83678 8.16952 8.29221 8.39588 8.58445 8.76808 9.48868 10.86002 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.041490 B = 0.005035 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.701219 B = 5559.580296 C = 5701.415036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.143 3.857 3 N -0.636 5.636 4 C 0.072 3.928 5 C 0.076 3.924 6 H 0.112 0.888 7 C 0.049 3.951 8 N -0.679 5.679 9 C 0.187 3.813 10 H 0.007 0.993 11 C -0.119 4.119 12 C -0.586 4.586 13 H 0.055 0.945 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 1.075 2.925 17 H -0.287 1.287 18 H -0.286 1.286 19 H -0.287 1.287 20 O -0.299 6.299 21 C 0.639 3.361 22 O -0.533 6.533 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.340 0.660 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -12.178 -0.900 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 N -0.385 5.385 4 C -0.052 4.052 5 C 0.019 3.981 6 H 0.130 0.870 7 C -0.082 4.082 8 N -0.313 5.313 9 C 0.081 3.919 10 H 0.024 0.976 11 C -0.177 4.177 12 C -0.625 4.625 13 H 0.074 0.926 14 C -0.184 4.184 15 N -0.548 5.548 16 Si 0.903 3.097 17 H -0.213 1.213 18 H -0.213 1.213 19 H -0.214 1.214 20 O -0.208 6.208 21 C 0.394 3.606 22 O -0.419 6.419 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.430 -11.079 -0.356 13.926 hybrid contribution -0.059 -1.253 -0.379 1.310 sum -8.489 -12.332 -0.735 14.989 Atomic orbital electron populations 1.22200 0.95720 1.02412 1.02687 1.21214 0.94198 0.78934 1.03432 1.48154 1.69349 1.14907 1.06072 1.22854 1.02239 0.91049 0.89079 1.24012 1.00384 0.96867 0.76815 0.87038 1.22292 0.91654 0.97529 0.96680 1.61185 1.05902 1.03133 1.61070 1.19290 0.84418 0.95624 0.92613 0.97580 1.21636 0.98352 0.97152 1.00539 1.22152 1.43896 0.91328 1.05168 0.92629 1.25979 0.93448 1.06747 0.92190 1.70822 1.43251 1.15548 1.25142 0.83448 0.76745 0.74042 0.75421 1.21311 1.21264 1.21371 1.87479 1.78803 1.28842 1.25641 1.18730 0.76311 0.80209 0.85335 1.90988 1.58089 1.72010 1.20798 0.91196 0.92010 0.92380 0.89997 0.89605 0.89299 0.89039 0.93805 0.91337 0.84162 0.93455 0.95907 0.94100 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.14 1.36 6.73 -4.04 -0.03 1.33 16 3 N -0.64 -8.11 2.96 -178.85 -0.53 -8.64 16 4 C 0.07 0.77 7.34 -3.15 -0.02 0.75 16 5 C 0.08 1.10 4.07 -26.16 -0.11 0.99 16 6 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 7 C 0.05 0.85 5.04 -3.83 -0.02 0.83 16 8 N -0.68 -14.92 6.23 -107.96 -0.67 -15.59 16 9 C 0.19 4.56 2.33 -68.87 -0.16 4.40 16 10 H 0.01 0.17 6.33 -51.93 -0.33 -0.16 16 11 C -0.12 -2.64 9.42 37.16 0.35 -2.29 16 12 C -0.59 -15.94 8.29 -34.44 -0.29 -16.23 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 15 N -0.91 -25.73 13.63 55.43 0.76 -24.97 16 16 Si 1.08 24.42 29.91 -169.99 -5.08 19.34 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 20 O -0.30 -5.51 10.72 -37.83 -0.41 -5.92 16 21 C 0.64 11.18 8.85 53.71 0.48 11.66 16 22 O -0.53 -10.99 17.54 -19.12 -0.34 -11.33 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.89 7.93 -51.93 -0.41 0.48 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 30 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 31 H 0.07 1.20 7.36 -51.93 -0.38 0.82 16 32 H 0.34 7.85 8.35 -39.29 -0.33 7.53 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.45 7.36 -51.93 -0.38 0.07 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.27 7.39 6.66 -40.82 -0.27 7.12 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -32.25 302.78 -6.73 -38.98 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.51 Total: 2.71 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 0.49 Total: 0.87 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.45 Total: -49.21 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.74 Total: -17.25 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.25 -6.73 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.719 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds